Array 1 84440-83129 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJD01000022.1 Escherichia coli strain SI-P075 sequence022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84439 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 84378 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 84317 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 84256 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 84194 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 84133 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 84072 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 84011 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 83950 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 83889 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 83828 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 83767 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 83706 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 83645 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 83584 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 83523 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 83462 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 83401 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 83340 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 83279 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 83218 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 83157 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100639-99694 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJD01000022.1 Escherichia coli strain SI-P075 sequence022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100638 29 100.0 33 ............................. GATTACGATTGCGTTAATTTGAAAAAACGCGAC 100576 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 100515 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 100454 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 100393 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 100332 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 100271 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 100210 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 100149 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 100088 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 100027 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 99966 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 99905 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 99844 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 99783 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 99722 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //