Array 1 171228-173331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171228 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171289 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171350 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171411 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171472 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171533 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171594 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171655 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171716 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171777 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171838 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171899 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171960 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172021 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172082 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172143 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172204 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172265 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172326 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172387 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172448 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172509 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172571 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172632 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172693 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172754 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172815 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172877 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172938 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172999 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173060 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173121 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173182 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173243 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173304 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189839-192308 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189839 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189900 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189961 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 190022 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 190083 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 190144 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190205 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190266 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190327 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190388 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190449 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190510 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190571 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190632 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190693 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190754 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190815 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190876 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190937 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190998 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191059 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191120 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191181 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191242 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191303 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191364 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191425 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191486 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191547 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191608 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191669 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191730 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191791 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191852 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191913 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191974 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192035 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192096 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192157 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192218 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192279 29 93.1 0 A...........T................ | A [192305] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //