Array 1 28301-28495 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 28301 36 100.0 47 .................................... CAGTGGGCTTCACCCCAAATTCTTTGAGCTGCCGCCGCAACGCAGCG 28384 36 100.0 40 .................................... TCTCTCAACTCGTGTTCTACTGTCAGTAACTCAAGTAATG 28460 36 50.0 0 ..................NNNNNNNNNNNNNNNNNN | ========== ====== ====== ====== ==================================== =============================================== ================== 3 36 83.3 44 TTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GCCCCCGCTTTTTGGTAGTCCTCGTCGCTAAATCCCGCCCCCTGGCCTGCTTGGGTTTCCACCCACACCTGGTGCCCCTGCTCCGTCAGAGCCCGCACCGCCGCCGGCGTCAGGCCAACGCGAAACTCCTGCTCCTTGATCTCTTTGGGCACACCAATGCGCATAGGGATCCCCATAGGGCTGTCTTCCAGTCTAGACAGACCAGCGCTGGGATGGGATCCCTGGCCGACGGGGGGCGGCAGGAATTGTAAAGTTTTGTGCGCAATCTGTCGGGGCGAGCCGTTGTTAGCTTTCCCCTGGCAACACCAGGCTTTAAGAGGAATCTAGAACTGCTTGCCCAAATTGACCCAAAAACGTGACATAATGCCCTCAAAACAGCGAATTTCCCGACTTGCGCTTATCCGGCGAAGCAGTGTTAATATCTGTTTCGGGAAGTCTCCGTACTCCCTCGCAAACGCACCTTGAAAACCTTATGGATTCAGCCTTTTCCGGGGGTAGGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAACGACGCCATCCAAATGGACATGGCGTCGGATTTATCGGCAGTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAACTATAGGGATCCGGTGGATCCCTGGTTAGGTCGGGGGTTGCTCTGCCCAGAAGGGAT # Questionable array : NO Score: 4.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 297660-297291 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================================================== ================== 297659 39 100.0 33 ....................................... GCCCTGATGGCATTCAGCTACATCTTTCCTGGT 297587 39 100.0 38 ....................................... ATTAAGGAACGTATCGAGCGTGAGTCGGAGTTGGTAAA 297510 39 97.4 69 T...................................... AATTCAGTTACTAATTCCGACATAGAACTATCTATCGGAGACAGCGTTCTTACGCTAACTCCTCAACAC 297402 39 100.0 34 ....................................... TGACCTAGACGCCAAGTACACGAAGGAGCAGGTC 297329 39 97.4 0 .T..................................... | ========== ====== ====== ====== ======================================= ===================================================================== ================== 5 39 99.0 44 AAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGTAGGGATCAACTAAACGTCCTGAGTGGTATGTAAAACATAACTTAGACATC # Right flank : CCTACCCTCGGAAAAGCCTGAATTCATGAGGTTTTCAAGGTGCGTTCGCGAGGGAGTACGGAGATTCCTCGACACAGATATTAACATTGTCCTCGCGGCCAAGCGCAAGCGGGGAAATTGAGCTTGCTACGGCCATTATGTCACGTTTTTGGGCCAATCGGGGCAAAAGATCTAAAGTTTCCCTTAAAATCTTGTGCCGGCAGAGTCAGGCTGGTGATGGCTCGCCCCGACAGATCGCGCACAAAACTTTACAATTTCGGCCCGGTGGAGAGCCTCAGAAGATCAGGTAGTCCGGCGGCTCATAGGGGGGAGGCCCCCCGAAGACTTTGGCCTGCTTCTTGGCCGCGGCATCCAAAGGGTAGGCCCGCAGGCTATCTTCCTGGAGGTTGAGCAGAGGCAGCCACGACTTTTCCAGCTTCTCTTCCAGCTCGGCAGTGTCCAGGGGGCATTCAAAAACGGAGTATTGCACTCGCTGGCAGCACTGCTCCAGGCGTTTGGCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.69, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 305791-306131 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 305791 37 100.0 41 ..................................... GAATCCAGATAATTGGACAACTTGACTTTGGATCGATGCCA 305869 37 100.0 42 ..................................... GCCTCTTCGATACGGTTTTGGTAGTATTCCCGATCCTCTTTT 305948 37 100.0 38 ..................................... CCCAGAATTTCTTCTGGGACCTCCCGCTCAGAATCTAC 306023 37 100.0 35 ..................................... TAGAGAGAAGCGAGTAATGAGCAAAGAGAAGTGAG 306095 37 70.3 0 .......T.......C....T.....A.C.T.CCTCT | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 94.1 39 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA # Right flank : TAACCCCCAAAACCCTGAACTTTGCTGAATTTACTGAGCTTTAGGCGGTTTGGCAAAAGTCATTGAGAGGGATATAGTAGACCAAGTTTCCCCCTGATCCTTGAGTCCACCGCAACGGTTGCCGGGAAGTGAAGGGGGAAAGCGCTCGGGGGGTATTCCTCAGGGCTTTGCGGGATACCGCCTTCCTGCTCAGAGATAGGCAGGATGCGATCGCTTCTTTCCTGAACCATGTTCAGGAGAGTTCAGCGTGAATGTATCAGGCTCAACAAAGTACCTCAAGTCATCTAGGGAAGACTGCTCGACGAGTAGTCCTGGGATCCAGACTGGAGAGAGCGGCGGGCCAGCTTGGCATAGGTCTTCACCGTCTCGTAGGGCATCTCCAAATCAGCGGCGATCTGTTGTAAGCTCTCTCCACCTTCGCGGCGGGCCAGGATCGTCGCCCACAGTTGGGCAGTTTTTTCGGCGCGGGATCCCCCTTGTCGTTGCCGCTGGCTGAGAAA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 466271-466801 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 466271 29 100.0 33 ............................. ACAAATACAGCCAGCTGGTGCGTCATTTGCCGA 466333 29 96.6 34 ............................A GGCGTTGCGCCAAGGTTCACCTATTCCCCGGAGA 466396 29 100.0 34 ............................. GCCACCCGTCGCACCGCGTCGGCCAGGTTGGGCA 466459 29 100.0 34 ............................. GTGGTGCTGGTGCGCCCCGCCGGCTCCAGTTTGG 466522 29 100.0 34 ............................. CCAGTAAGAGATTCACGATGGAAGTGAACAACCC 466585 29 100.0 34 ............................. CCGCCGGACGCGCCAGATGAGCCGCCAGCAGAGC 466648 29 100.0 34 ............................. CGCTCAATCTGCTCACAAATCTCCAGTGCTGAGA 466711 29 96.6 34 ............................A ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTAC 466774 28 82.8 0 ............T.T.....A..-.G... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.3 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : CGGTTCGAGCGGATATTAGTTTCTTGAAGGATCGCTTTCAAGCCCCCATCAAAGTCAGCCGTGAAAAAGGGTATCACTACACTGATCGGGAATGGCGCTTGCCGACGATACCCCTCACTAAGGGGGAGCTGTTTGCCCTGACTTTGGGAGGGAGAATGCTGGAAGCCTACGCCGGATCGGCCTATGCCCCGCAGTTGCGCTCGGCAATTGGGCGGTTGGCGCAACGGCTTCCAGAGCAGGAGTGGCTGGATCTCCAGCAGCTAGCCGATGAGCGGCTCATCTTTCGGGCAGGGGCAGAAACCCATCTGGATTGGGAGATTTGGCAGCGGTTGGAGGATGCCTGTCGGGAGAAAAGACGAGTGTGGATGCGCTATCGCACCGCCAGCCGAGGCGATCAAGTGTCGGAACGGGAGTTGGATCCCTATCTCTTGCACATCTACCGCGGCACCAATCCCTACGTGATTGGCTGGTGCCACAAAAGACAAGAAGTGCGCTGGTTC # Right flank : GGCTAGACAATTAAGACAATCTCACATCTACCGGGATCCCTTGCCTAGGTGGGCGACACTGGGGCTAGGTCGCAGAAGCGCGATATCTAAGGAGGGGAGTATGAGCAGGAGCTTGCTGGAGCAGTTGCGAGAGATGACGGTGGTGGTGGCCGACACGGGGGATATCAACGCCATCGAGACCTTTAAGCCGCAGGATGCCACCACCAATCCCTCTTTGATTACAGCAGCCGCCCAAATGCCCCAGTACCAGGGCATTGTCGATGAGACCTTGCTCAAGGCCCGCCAAGACCTGGGATCCAAAGCCGACACCAAAGCCGTGGTGGCCCACGCCATCGACCAACTGGCGGTGGCCTTTGGCGTGCGCATTTTGTCCATCATCCCCGGTCGGGTTTCGACGGAGGTGGACGCCCGGCTCTCCTACGACACAGCAGCCACCGTGGCCAAGGCCCGCCATCTCATCGAGCTCTACAAGGCGGCAGGGGCGGATCCCAAGCGGGTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1555627-1556043 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1555627 36 100.0 41 .................................... ACTAACGTAGGGACACGGCTCTTCTTGCAACGGAATATTTC 1555704 36 100.0 37 .................................... TTGCGTTTCCGCAGAGCCTCTGCCCTTAGCCAAGTAC 1555777 36 100.0 35 .................................... GAGGAGAAGCCTGCCGACAAGGCTTCTCCTTCCGA 1555848 36 97.2 49 .........................G.......... TTTGGAAACTCCCCCTGCTGTGTTCCAGGGATGATCTGGATCCCCTGAA 1555933 36 88.9 39 ...AT......A.A...................... CGCTCCCGGCATTCCGAGAGCGGCAAAGGTTTTAGCAGT 1556008 36 75.0 0 ...TT...............TTG....G.CA....G | ========== ====== ====== ====== ==================================== ================================================= ================== 6 36 93.5 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCGGCCATGAAT # Right flank : GAAAAAACTAGCCCTTGATACACAGAATGGGTCTTAGGCGCGCTACGAGTTTCGCGATCTTGGCTTGGTCGGCAGCGCGCACAACTTTATCTACGTTTTTGTAGGCCTGGGGCGCTTCTTCGGCTACCCCCCGCAAAGAAGGGCTGCGGACGATGACGCCGCGCCGCCTCAGTTGTTCGACGATCTCCTGCCCTGTCCAGGCTTTGAGAGCTTGGTTGCGACTCATCGCCCTTCCGGCGCCGTGGCAGGCCGAGGAGAGGGAAAGGGCCTCACTTTGCTCCGTGCCGACCAGAATGTAGGAGGCCGTGCCCATGGAGCCGCCGATGATGACCGGCTGACCGATAGAGCGGAAAGCCTGAGGGATCTCTGGGTGGCCAGGCCCAAAAGCGCGCGTTGCCCCCTTGCGGTGGACGAACAGGCGACGTTTTTTCCCCTCTATCACGTGCGTCTCCTCCTTACAGGTGTTGTGGGAGACGTCGTAGATAAGGTCGAGTTCAGCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 2244403-2244734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2244403 36 100.0 38 .................................... CGAAGCCCACGACCAGGGAAGATATACGCGAAGCCCAT 2244477 36 100.0 37 .................................... ACCGGCAGAGCCTCCTCCAGCTTACTCTTCAGATCGC 2244550 36 100.0 39 .................................... TTGTAGAAACGCCACGGGCCCAACAGCTTGATTCGCATA 2244625 36 100.0 38 .................................... AAAAGAAAACCTGCTACCCAGTGAGTAGCGGGTTAGTG 2244699 35 75.0 0 .C..T......-A...A...T.C...........GG | A [2244729] ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 95.0 38 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGGCTAAGGAACTCCGAGTAGATCTCGGTATAGGCCTTGACCCACTCGGGATCGGGCTGGATGAGGCGTTCCACCTGCACCAGCCGATCGGCAGCCTGCTGCACCGAGCAGCACCAATAGGCCGAGGCGGCCAGGACAGCTGCCCCTACGGCGGCCTCGGGGTGCTTGACCACTGCTAAGGGGCGGGCAAGGAGGCTGGCGCGCAGGCGCAGCCACAGAGGGCTTTTGCAGCCGCCGCCGGTGGTCAACAGCGTTCCCTCTATGGGGATCCCGTGGGCGGCCAAGGTCTCCAGCCCCAGCCGCTCCACCATTGCCACCCCTTCCAAGAGAGCTGCATAGAAGCGAGGGGATCCCACTTCCGCCTGGGGCAAGAAGCCGGCAAATTCACTATCCAGGATGGGAAAACGCTCGCCGGGTCGGCAGAGGGGATAGCTGACCAAGCCCGTGGGCAGATGGGCTTCCGCCTGCCGATCCAGGGCAGCAAAGTTGCCGCCGGGGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 2342677-2343020 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUNA01000001.1 Synechococcus sp. 63AY4M1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2342677 36 100.0 43 .................................... TTTCATGCTGGGCTTTGCCCAGTGATGTGTTGTTTCGGAGGTC 2342756 36 97.2 40 .........................A.......... CCAGACGTTTTACGTGGTGGAAGTCTCCACCCGAGGCGGG 2342832 36 100.0 38 .................................... AAGCTGAACGATGGCGTAGTGATGTCGGCTCCCAGCCC 2342906 36 97.2 43 .......................C............ TTTCCCATTATTACGAGAGTCATGATAGCAGACGAGCAGGAGT 2342985 36 97.2 0 .......................C............ | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.3 41 GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Left flank : GAGTGGGATAACCCCTTGATTACAGGCATCGGCTGGATCAGCGAACTCATTCGTTTGTGTGGAGCTGAAGACATCTTTTCCGAATTCAGTGCCTATCCCGATGCACGGCGCCGGATTATAGCTGAACCGGCAGAGGTCGTGCGGCGCGCTCCAGACATCATCCTGGTGTCCTGGTGTGGCAAGAGGTTCAAGCCTGAGCGGCTTCACAGCCGCCCTGGGTGGGAGACTATCCCGGCGGTCTGGAGCGGACACGTCTACGAGCTGCCGTCAGAGGTGATTCTGCAGCCCGGTCCGGCTGCCTTGACCGATGGGGTGCAGTTGCTGCTGCAGATCTTTGACCGCTGGGAGGCCCAATCCTCCGCCTAAGCTTTGATGCTGCTTTCGATATGGTTGTGGGCCTGGACGGCGTCATACTCGAGCCCGAAGTCTTCTAGCGCGTACAGCACTGCCCGATTGTGGCTGCTGCACAGGCGCGTGAAGTTTGGGAGCACCTGGCGGTT # Right flank : CCGTGTTCGAGCCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATTTCTAGGGATCCCCACGAAGGGGGAAC # Alternate repeat : GTTTCCAATTTCTAGGGATCCCCCCGAAGGGGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //