Array 1 262545-263651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPR010000009.1 Pseudomonas cichorii strain LCYJ08 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 262545 28 100.0 32 ............................ AATACTGGACTATTCATGGTGTGAAGCATTAT 262605 28 100.0 32 ............................ ATGGTGAACTGGTCGTCGGTGATCGTCGAACC 262665 28 100.0 32 ............................ AGCGTAGGTCGAAATCTGCAAGATCCAGTGAC 262725 28 100.0 32 ............................ AACCATCCCGCCTGCGCAATCGCTGCCAGCCG 262785 28 100.0 31 ............................ TTGACGAACAGACTGCGTACCTTGCACGTTC 262844 28 100.0 32 ............................ GTCGACAATGACCGTCTCGGGCACGTCAAGAC 262904 28 100.0 32 ............................ ACTCGCCATCGCCGCTGGCCTGAAGCTTCGTC 262964 28 100.0 32 ............................ AACATGAGCAAGGTCTACGTCCGGCAGCTCAA 263024 28 100.0 32 ............................ AGTCGCGGCAGGCCGCCCAGCAGTCGAGCAAG 263084 28 100.0 32 ............................ ATGTCAGAGCACCCGCTTTTTCTGGTCATTCG 263144 28 100.0 32 ............................ TGGCGGGCGCCCTTCTTCTGCGCAGATACTTC 263204 28 100.0 32 ............................ GATCAGCACGGCCATGTGTTGAACCGCATTTA 263264 28 100.0 32 ............................ AGTACGGTGGCTACGGAGTTTTAGTCGAAGCC 263324 28 100.0 32 ............................ CGGTTGCCACGATCCTTCCACCGGTTCGCCCG 263384 28 100.0 32 ............................ GTGCTGAACAAGCACCGATCCGGCCCCGTCCA 263444 28 100.0 32 ............................ TGATAGATCCGCCCATTTGCAAGCGTCATCTC 263504 28 82.1 32 G.G.........G....T..T....... GTCAGCCCCTCGTGAGAAGGGCTGCAAGTGAA 263564 28 85.7 32 G.G.........G....T.......... TCTACGGCCTCGGCCCAGCGCGAGGGCTAGGC 263624 28 89.3 0 ...........C..........C....T | ========== ====== ====== ====== ============================ ================================ ================== 19 28 97.7 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGACATTTCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCACACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAGGCTGTCATGTCGCTGGGGACTACATCAGAAAGCACAGCGATGTCCCAGAGCTTGCGAACATCTACCCAGTGGTGAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : TTTGGCCACCCCAGCGGGATGACAAGGGCCGCACACAGCCCCAAACCAAAGCCCTCGTAATAACCACACTACAAGGGCTTCAGCCCGCATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCCTCCGTTAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGGAGGTTGCCCAGGCCGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 273466-272359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPR010000009.1 Pseudomonas cichorii strain LCYJ08 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 273465 28 100.0 32 ............................ AGACTCAATCGGGAATGTCGTGACGTTGACAG 273405 28 100.0 32 ............................ GCATGGGCATCGGCGGTCTGCACAGCAAGGAA 273345 28 100.0 32 ............................ TGGAGATACGATCATGCCAACAGTACGTAACG 273285 28 100.0 32 ............................ ACGGGGTATTTGGCCATCACTTCGCGCATGGG 273225 28 100.0 32 ............................ TAGATAAACTTGGTCATTCTGATTGGGAAGTT 273165 28 100.0 32 ............................ AGGTTCGGTCGCACAAACAGCACTCGACGCGT 273105 28 100.0 32 ............................ AACTGGAACCCGTTCAAGTTGGACCTTGAAAA 273045 28 100.0 32 ............................ AGACCGTGACCGCGCCCAACCAGGCCAGTTTG 272985 28 100.0 32 ............................ AAAGAACGATCCCATCAGCAACATGGGTCAAC 272925 28 100.0 32 ............................ ACTCTGGGTGTGAAGTATGTGGGGGCTGGATT 272865 28 100.0 32 ............................ CAAGTATCGGGCTAACGCTATGACCTGTTCTT 272805 28 100.0 32 ............................ TTGCCGGTGAAGTACAGGCCGCGGTCCCCACG 272745 28 100.0 32 ............................ ATGAAAACCGGCTTGCCCAGATAGGTAGCCAG 272685 28 100.0 32 ............................ CAGTTGAGTGTGAGCGCCTTCAGGGCTTTCCA 272625 28 96.4 32 ..........T................. TTGCAGGCAAGGCGTGGCGGCGGATAGGCCAT 272565 28 100.0 32 ............................ AGCGCTGAGCGCCAGGCGAAACTTGAGGAAGC 272505 28 92.9 32 ............C....T.......... ATGTCGCCATCTTCCCAGTAGTAGAGGTCCAC 272445 28 92.9 31 .............C........C..... CCGTCCGCAGACATTCATCTAATCATTCATT 272386 28 82.1 0 ...........AAC........C.C... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.1 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCGATAGTGAAAAAAAGAGGGTCAAGAAAGGGTTCACTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCATTTTGTACAAGGCAGCTTGCTGGCGACTTCAATGTACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATACCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTCTTTTTTTCACCTCATATGCACCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGATAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : CAATCAAATCCACCCCCCAATAACCCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGGCTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGCTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 274073-274400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPR010000009.1 Pseudomonas cichorii strain LCYJ08 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 274073 28 100.0 32 ............................ ATACCAGCCCTTTGCCTTATGCTTACCGTCCG 274133 28 100.0 32 ............................ ATTACACAAGGCGAAAAGGCTTTCGGCTTATA 274193 28 100.0 32 ............................ ATTGCAGCGCCACCCTGTTTGGGTGCTGCCAC 274253 28 100.0 32 ............................ ACAGCCTCTTTGAAGCGGAAGTGGCCTAAATG 274313 28 100.0 32 ............................ AGTCCGGGCAGTTGGCTTTGAGGAATGCGTTC 274373 28 85.7 0 ...........CA..A..........G. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CATATGAGGTGAAAAAAAGAGGGTCAGAATCAGCATTCCGGAAAATGTTTTTGTGCGTCTATTGCTCGCTGTAGATACGGGCACGCATTGTCGCGGGCAAGCCCCCTCCCACTGGTGGTACATCCGAGTCGGTTGAGCACCGTCTTCGTTACTGAAGTCGCTACGGAGTAATGCCGATCAGTTAAGGTATACACAACACTTGTGGGAGGCAGCTTGCTGGCGAAAAATCTGAAAAGCGGCAGATATTCTGCGGCTGTACATTGAAGTCGCCAGCAAGCTGCCTTGTACAAAATGATTTATCAAAAAATACGGCGCTGTCGCACTCCCCGGGAATATCTGTCTACGGTGGCCAAGAGTGAACCCTTTCTTGACCCTCTTTTTTTCACTATCGGTTCGTCTTTTAAAAATCAATGATTTACAGATATCGATAAAAAAAGGGGTAAACGGCTGCTGGTGCATATTTTTCTTTGAGAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : AGCTTCACCGCCATAGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCAATAGATATCCATCGCCTGAAGCACCGTCTTCGCGACTGAAGTCGCTTGTATGGTAGAGCTTGAAGGGGTGGTGGGACGAACAATTCGCATCTGACTGCAGCCACAGTACAGACCGTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //