Array 1 639512-641921 **** Predicted by CRISPRDetect 2.4 *** >NC_017563.1 Streptococcus thermophilus ND03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 639512 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 639578 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 639644 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 639710 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 639776 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 639842 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 639908 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 639974 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 640040 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 640106 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 640171 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 640237 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 640303 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 640369 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 640435 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 640501 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 640567 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 640633 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 640699 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 640765 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 640831 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 640897 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 640963 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 641029 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 641095 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 641161 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 641227 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 641292 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 641358 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 641424 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 641490 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 641556 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 641622 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 641688 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 641754 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 641820 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 641886 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1364416-1363057 **** Predicted by CRISPRDetect 2.4 *** >NC_017563.1 Streptococcus thermophilus ND03, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1364415 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 1364349 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 1364283 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 1364217 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 1364151 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 1364085 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 1364019 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 1363952 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 1363886 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 1363820 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 1363754 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 1363688 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1363622 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1363556 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 1363490 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1363424 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1363358 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 1363291 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1363224 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 1363158 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1363092 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //