Array 1 5418-6910 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLQ01000336.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008086 CFSAN008086_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5418 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5479 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5540 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5601 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5662 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5723 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5784 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5845 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5906 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5967 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6028 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6089 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6150 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6211 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6272 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6333 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6395 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6456 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6517 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6578 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6639 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6700 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6761 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6822 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6883 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1047-2828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLQ01000069.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008086 CFSAN008086_201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1047 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1108 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1169 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1230 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1291 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1353 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1414 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1475 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1536 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1597 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1658 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1719 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1780 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1841 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1902 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1963 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2024 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2085 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2147 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2250 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2311 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2372 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2433 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2494 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2555 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2616 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2677 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2738 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2799 29 96.6 0 A............................ | A [2825] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //