Array 1 131565-124304 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXI01000005.1 Neisseria weaveri strain C2010015191 C2010015191_S31_ctg_1203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 131564 32 100.0 35 ................................ GGTTAAAGCATTTGGGGATGGGCCATTTCCCTAAA 131497 32 100.0 34 ................................ TCCCTACAATGCCATAGGTTTCAATCAATCTCTT 131431 32 100.0 35 ................................ TTCCTTTTTTTTGAGGCCAGCCTGTTTAACGGCTG 131364 32 100.0 34 ................................ CTTACGGTGAGGGTGAGGTTAAACCTTATTATAA 131298 32 100.0 36 ................................ TCAAACAGAGCTTGACCATTTCAGCAAACATTGCAC 131230 32 100.0 34 ................................ TGCAAATATTTTGTACGCTGAAATGAAACGTGAT 131164 32 100.0 34 ................................ GGGCGTTGGAAGCCGAGCGGGCGGAGATGCAGTA 131098 32 100.0 33 ................................ AGACGGCCTGACGGTACGGCGGCGAAAGGCTGG 131033 32 100.0 35 ................................ TAAGTCATTCCGATATGGTAACGAAATTGCTGAAG 130966 32 100.0 36 ................................ AAGCTAATGCATCTAAAATTAGGCATCATATTCCAG 130898 32 100.0 35 ................................ CTGATACACCTGAAAATGTGATTGGGTTTCTTCAA 130831 32 100.0 34 ................................ TCCAAAAGCGTAAGGCAATAAAGCAAGCCAACAA 130765 32 100.0 34 ................................ CAAAAAAAAAGTCCGACACTCGCTTGGCCTTGAC 130699 32 100.0 34 ................................ TTAGCAAATGTGTCCGCCCGAAGATTACCCGCTG 130633 32 100.0 35 ................................ TGCCGTGTATTTGCAACTCTCAATATCAAATGCAG 130566 32 100.0 34 ................................ TTTGAAAGTGTCAACGTATAACAAGATTACTAAA 130500 32 100.0 35 ................................ ACATTGTTGACTAAAGTGTAGGGTTATTATAAGTC 130433 32 100.0 36 ................................ TCAAACAGAGCTTGACCATTTCAGCAAGCATTGCAC 130365 32 100.0 34 ................................ GACAGCTGGTTGAGCAGGTTGGGTTGGCCGGCTT 130299 32 100.0 34 ................................ ATAGATGGCTTCATTTTGTTTAGTTGTAAACCCC 130233 32 100.0 34 ................................ AGTATTTTGGCAGAATCAGCCCCTGAACCTTTTT 130167 32 100.0 34 ................................ ACAATAGGTTTTAAAGTAAGAGACTTTAATAACG 130101 32 100.0 35 ................................ ATCAAAAACAGCTTGACCGTTTTTAAACTTAGACC 130034 32 100.0 34 ................................ GGTATTGCTGAATCTGTAATTGATTTATAATAGC 129968 32 100.0 34 ................................ AGATTGTCGGTATCTTTGCTTTCCGAGTTCGACA 129902 32 100.0 35 ................................ CATTGCCGCCGCCACCATTGTAAAGGTTTTGCCCG 129835 32 100.0 35 ................................ GGCGGTTGCGTACTGTTGTTGCAGGCTGTCCAAAC 129768 32 100.0 34 ................................ TTCGGTCGCCTGTTGGTTGACCACACGGGATTTG 129702 32 100.0 34 ................................ AAACTAGTGCATTAAGTAAGCGTGAAAAAGCCAA 129636 32 100.0 35 ................................ AAAAGTACCGAGCACGCCCAAATCAAAGGTTTTGC 129569 32 100.0 34 ................................ TTTGCAAATTGCCGAAACTTCTTGGGTTGTTAGG 129503 32 100.0 34 ................................ TTGTTCAGCTAGATACATTGCACAAACACCCTTT 129437 32 100.0 34 ................................ AATCATTTTTGCCCTGACCGCTGGCCGTGCGCTT 129371 32 100.0 34 ................................ ATTTTCAATATCTTTAAAATTGAAAATGGCTGAA 129305 32 100.0 34 ................................ ATTTAAGGCTGATTCTGTGGGTAACGATAGGGTA 129239 32 100.0 34 ................................ TAGCATTTTATACTAAAAATCGCCAGCAGATTAT 129173 32 100.0 36 ................................ GTTTGACTGAAAAAGGTCGAGAAGTTTTGGAAAAAG 129105 32 100.0 34 ................................ AACAATCCTCTTTTTATTTAAAAACGTCTAAGTC 129039 32 100.0 37 ................................ AGCCATTTAGACAGTCTAATAGGATTGAGTACCTTGC 128970 32 100.0 34 ................................ CTAAATGCGATCCGGTTGATAATGTCAAAAGCGG 128904 32 100.0 34 ................................ CTTTTTTTGGTTAGGGTGATTATTACAAGTCTTT 128838 32 100.0 36 ................................ TCAAACAGAACTTGACCATTTCAGCAAGCACTGTAC 128770 32 100.0 35 ................................ TGCAACTCGCAACTGCCCACAGCAGGCATTGTCAG 128703 32 100.0 35 ................................ TGCTTGTCTGAAACTAAATGACACTCGTCAATCAA 128636 32 100.0 35 ................................ AACATCAACCATAAATTGCAGGCCGTGCAACAAAC 128569 32 100.0 35 ................................ ACACACTCTTAACACACTTTAACACGTCTCTATAA 128502 32 100.0 34 ................................ TAGCATTTTATACTAAAAATCGCCAGCAGATTAT 128436 32 100.0 36 ................................ TCAAGGAAAGCAAACCCGATTCGGCAGCAATTGTTA 128368 32 100.0 34 ................................ ATTGAAATGGGTGTTTTAAAAGAATTGTCAAAAC 128302 32 100.0 34 ................................ TCAATTACCTTCAATTTTGAATAAAAATGGTCAA 128236 32 100.0 34 ................................ TTCATTTCAATATAAAAGCCATGATAAACGCCAT 128170 32 100.0 35 ................................ ATATGTAGCACTAACAAAGCTAAACTTAAAAAGAT 128103 32 100.0 35 ................................ AGGAATCGGGAATCGCGGAATAATGTGAACCGAAC 128036 32 100.0 36 ................................ GACTTCTTCCCCGTTCGATTCGGCCCACCAACCCAC 127968 32 100.0 35 ................................ CTGCTTGACCATAAGCTAAAATTTTAACACCGTAA 127901 32 100.0 34 ................................ TTTACAAATTGCCGAAACTTCTTGGGTTGTTAGG 127835 32 100.0 34 ................................ TTGTTCGGCTAGATACATTGCGGAAACACCCTTT 127769 32 100.0 34 ................................ TAGCAAGCATTGTTGAAAACATTGAGTCTGCCTA 127703 32 100.0 35 ................................ AAGCGGGCGATTGGATTTTTATTGGTGGGGAAGGT 127636 32 100.0 35 ................................ ATATAGATGTTAACGGATATTTATTCAAAATGGGT 127569 32 100.0 34 ................................ GGTTAATATAATTTCAATCATTTTTTGCCCTGAC 127503 32 100.0 34 ................................ CCATATTTGCAAAGATTGAGATAATTGCATCATC 127437 32 100.0 34 ................................ ATTTCAAACCCTTTCGTTGTTTTGGCGTTATTGC 127371 32 100.0 34 ................................ CAGCCGATAAAGGCATATTCATGACCGTGAAAAC 127305 32 100.0 35 ................................ CCAGTCTGAAATACTGTCAACTTGAATAACAGCTG 127238 32 100.0 36 ................................ GGCCACATCAACAACCAGACAAACACCCGTGTATTC 127170 32 100.0 35 ................................ AGGGCGGTTTTATCACACAACCAAGCAAAACCGAG 127103 32 100.0 34 ................................ CGATTCCGTTGGGAATTTCCATCTTGCTGCTATA 127037 32 100.0 34 ................................ CCAAGGTCAAGTACATTCAGACGGCATGAATTTT 126971 32 100.0 36 ................................ CGTTTTGAAAAATGGATCGATGGAGACAGGAGGTAG 126903 32 100.0 35 ................................ GGACAAGGAGGCTATGTACGGCACTTCTCGCGTTA 126836 32 100.0 35 ................................ TGCAAAGCATCTTGGAGAATCGGCGGTAACGTCCG 126769 32 100.0 34 ................................ ACGATTGATGGATATGCCTCGGCATCTCCGTTAA 126703 32 100.0 35 ................................ GTACTTTTTCATTTCTCATCCTTTTCAAAACAAAC 126636 32 100.0 34 ................................ ATCAAAGACTGCCGTTGCGATAATCAAAGCGAAT 126570 32 100.0 34 ................................ GATTGAGCGCAGCAGGTCGGGCGCGTCTCCGTTG 126504 32 100.0 34 ................................ AGACTGTGTAATTCCAATAGTTATGTACATCTGG 126438 32 100.0 34 ................................ ATTAGTGCTCAAAACGAGGCAAATGAAGCACAGT 126372 32 100.0 33 ................................ TACCTTCAATGGCTGAATCCGTTAGCCAATCGC 126307 32 100.0 34 ................................ ATAAAGGCGAATAGTAGCGGCAGAAGTGGGCGAG 126241 32 100.0 35 ................................ TGAAAACAAACTGTATCTCATTCACAATCAAGAAA 126174 32 100.0 34 ................................ GCCGCGTGCCAGCCGTTTGATATAGGTGTAGCCC 126108 32 100.0 34 ................................ TGAATTTTATGTTTTGAATTGTGCGGAGAAGAAT 126042 32 100.0 34 ................................ ACATTTTGCTTTTTACTGATTGTGAGCCTCGGAA 125976 32 100.0 35 ................................ TATGAACCTGCCTTTTGAATCGGTTACATAACGGC 125909 32 100.0 34 ................................ TGGAAAGGCATTGCAACGGTATGCGACAACGGCA 125843 32 100.0 35 ................................ AACCCACAATTGGGCGTTGAGTTTGCAGGCCAACA 125776 32 100.0 34 ................................ AAAACATACACATCTTGAACGTAAGGCAGTAGGT 125710 32 100.0 34 ................................ AATGGCAGGTACTCTTTTGGAACAAATATTACCT 125644 32 100.0 34 ................................ GGCATTAATTTGTTGACCACTGATTTCAAAGCCC 125578 32 100.0 35 ................................ GGAAAATGATAGATTCTTACGGTGGCTCTTTGCCT 125511 32 100.0 34 ................................ AAGTGTTGCTGAAATTGAAAATGTGTGTCCTTTT 125445 32 100.0 35 ................................ TTCAGTCATACCTTAAAAACTGAAAAAGCGTCTAA 125378 32 100.0 34 ................................ TGTTGCGGTTGGGCGAAAAGCTAAGGCGATCTCT 125312 32 100.0 33 ................................ ATTCGGCAAGCGTACCGCACCCAACAATTCGGC 125247 32 100.0 14 ................................ CGGATCGTTTTTTT Deletion [125202] 125201 31 75.0 37 G..C.T..-.C.A.TT................ TTATATACATTTTATTTTTCTATTTTTCTTTACAAAA 125133 32 100.0 35 ................................ AGAAATCTACAACAAGCCAAGAGTGGACTGCAAAA 125066 32 100.0 35 ................................ CAGTCGGATTGCGTTTACGAACCATGTTACCCATT 124999 32 100.0 35 ................................ AATTGTTGCTGCAATCGGCCTGATGTCAGGTATTT 124932 32 100.0 35 ................................ TCCAGAGAGTGTCCTTGGTCAGGCGTGCGGCTTGG 124865 32 100.0 34 ................................ GCTTTTAAAGAGTATCCGCTCCGCAGTTGAAGAG 124799 32 100.0 34 ................................ TCCATATAAGAAACAACGTTTTCAGGAGTATCGG 124733 32 100.0 35 ................................ TTGATGATGTGATACAAGCTAAATCAGAAATTGAG 124666 32 96.9 34 ...............................T AGGCCGGTGTAAACGCCGCCTTCTTCGGTGCCGA 124600 32 100.0 35 ................................ GTCTGAGCTGAAGTCATTTTATCAAGCAAGCCAGC 124533 32 100.0 34 ................................ GATTGCATGTTTAATCCCAGTTTTGTGTTGTTGT 124467 32 100.0 32 ................................ TTCTTCCCCGTTCGATTCAGCCCACCAGCCCA 124403 32 96.9 36 C............................... CAAAAAATGCTAGAACTTGAGAAAAAGCACTTGGAA 124335 32 96.9 0 G............................... | ========== ====== ====== ====== ================================ ===================================== ================== 110 32 99.7 34 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAATAGGGGAAATAGCATGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACACAGAAGGACAGGCGAGGTTGCGGCACATAGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTGAAACTCAAAGCCAAGCTGCTCGACACCTACCAGCCCGAAACTGACAGCCTGCGCTTTTACCATTTGGGCAGCAAATGGCGGCGAAAGGTGGAACATCACGGCGCGAAGGCGGCGGTGGATGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCTGTGGTTCTCATGAAAATGCGGGGTGGTTGGCGATGTAGGATTGTTCTTTAACAATCAGGAAATTAGCAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGTTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCTGAGAAGGCT # Right flank : ACGGTCAACGACAACTGCACCGCCGTTATCCGGCTGTAACATCGCGCGCGTTTTGTCACCATTTAGCGATTTTTTTGTCACCATCCGACAAACAAACTGGTGACAAAAAATCCGCTAAAACAAACCCCGTTTAAAGATAGGTTAAACGGGGTTTTTAAACGCCTAAAGTTTGTACACCAGATTATCCTCGTATGAGGCATATTTGCTGACCTTAGCCTGCACGGTTAGCCGGGTAGAGTGATCAAATACATGCCAATTATCCAGCTGCATAGACACGACCGCATCAATATAGTCGATAAACTCCGACCGCGTAGAGCTGAAAAACAGATATGGCGGGCGTACAAGATTGACAAGTTTGAGGTAATCAACCAAGCCGAAGCGGCCGTCTTGAGCATAAGCCGCTTGTGTAGTGGATAAATAGGGCGGATCAAGCACCAACAATGCTTGCGGGTCGTCGGAAAACTGCGGAATCAACGTCTCGTAAGACTGGCGGATTATCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //