Array 1 1484-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBOP010000026.1 Bifidobacterium breve strain MSK.23.143 NJBAFHED_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1483 33 100.0 34 ................................. AATAACTCTCAAATCCTCAACATGATTCGCAACG 1416 33 100.0 34 ................................. CTCTGCCGTACGGCGCAGATAGATGAATTGCCAT 1349 33 100.0 36 ................................. CCGCATATCCGCCCTGCTTGGTAAACGTCGTATCAG 1280 33 100.0 34 ................................. CGCTCGGATGCGGTCGAGTACGCCATCGGTGATA 1213 33 100.0 34 ................................. ATCCCCATCGAGTCCGAACGCGACAAGAACAACG 1146 33 100.0 33 ................................. AAGAGCATCGCGCATCTGACAGACGACGGCAAC 1080 33 100.0 34 ................................. AATATCCGCGGTCACTTCTACAGTTTCCGTGCGC 1013 33 100.0 35 ................................. ACCGTGGATAAGCCCAAGTCGGCCAACAGTCTGGC 945 33 100.0 35 ................................. CTACAGTCAACAGTCCGCTGACTGGGCGTACCAAA 877 33 100.0 34 ................................. ATCGTAAATCGGATAATAGTCTTCGCTCAGATGC 810 33 100.0 36 ................................. ACGTGAAACACAACAGCAGTGGTTTGAGAAGATGGA 741 33 100.0 36 ................................. AGCATGATATTACGTTCGGCAGTTGCTATGTGACGC 672 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGGC 606 33 100.0 33 ................................. AACTTGTCCAACGGCATCATGGGCGTGCTGGTC 540 33 100.0 34 ................................. GGTCTACGGCTACATGGCCGTGGCGGCCACGCAC 473 33 100.0 34 ................................. CAAGGGTCCGCACTTCCATGGTTCTACTCCCAAG 406 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 340 33 100.0 33 ................................. AAGGTACTCGCGGAAACGCAGGGCGTGGCCCTG 274 33 100.0 33 ................................. GTCAACGAATGGTACGCGAAGGCATGCGACGAG 208 33 100.0 33 ................................. CGCGCCGGGATGCTGCCGATCCTCGTGGGCGTG 142 33 100.0 35 ................................. TTTTGTTGCTGGAATTATAAACACATTCTAGTGGG 74 33 78.8 0 ....................T..CTG..C..TA | T [53] ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : AGAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 110-2095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBOP010000017.1 Bifidobacterium breve strain MSK.23.143 NJBAFHED_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 110 33 100.0 34 ................................. CGCTCCAAGGGGCCGTCACCGGCTACGGCCACTG 177 33 100.0 36 ................................. AGGCTTTGGCGAGATACCAGGCGGACTTGTCCGCGG 246 33 100.0 36 ................................. GTCGCGGTAGGCGACGATGAGGCGGCGGACCGTGTC 315 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 384 33 100.0 34 ................................. GGCAACCTTTGGGACGGCGCGCACTACGGCGCGT 451 33 100.0 34 ................................. CCGTACCTCCTCGACGTTGATTCTGCCTTGCCGG 518 33 100.0 35 ................................. CAATACTCGTGAATCGAAGCAAGGAAGAAATTCCA 586 33 100.0 34 ................................. GCCAACTATCGAACCATCGTCTGCAAACACTTGC 653 33 100.0 34 ................................. ACGACAAGACTGTACGGGGTTCGATTCCCCGCGA 720 33 100.0 34 ................................. TTTTCGGTCACCATGGTGTTTCTATGACGCAAGC 787 33 100.0 36 ................................. AACGCGAGGTTCGCGTACTGCAACGGGGTGCGCGGG 856 33 100.0 34 ................................. CTGGCCGGTGGGGCCGGTGTCGCCTTTGGCCCCG 923 33 100.0 35 ................................. GCCGCGAAAGGCAAGGCGAGCAAGCGGATCGGCAA 991 33 100.0 33 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAG 1057 33 100.0 36 ................................. CGTTTGGGTGTACCTCGAATCGCATCCGGTAGGCGG 1126 33 100.0 34 ................................. CGCAAACGATTGACGAGATCGTAGACATTGGAAA 1193 33 100.0 33 ................................. GGATCGTCGGCCGTGCAGATGCTCGAATGGAGC 1259 33 100.0 34 ................................. TTACCAACCCCGGAAGCAAGGCCGACCCGACCAT 1326 33 97.0 35 ..................G.............. AGACTGTTCGGCGGTGGTGGCATCGACTGCATCCT GG [1340] 1396 33 100.0 32 ................................. TGCGTCTCCAGACCGATCGGAATGGTCTCCTG 1461 33 100.0 34 ................................. GGCGAATACAGCCCTGCCATGGAATCGTCCATGA 1528 33 100.0 34 ................................. ACGCGCGACGTGATGTACAGGTGATTCCGCAATA 1595 33 100.0 33 ................................. CGTGCAAGCACCCCCGGAACCCGGCAGTTTACA 1661 33 100.0 35 ................................. TGCCGCAGGGCGAAACGACCTATATTGCGGTGATG 1729 33 100.0 34 ................................. GATTTGATGGGCATCTCCATGTGGATGTCCATAG 1796 33 97.0 35 ....................T............ AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1864 33 97.0 33 ...................A............. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1930 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1996 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 2063 33 87.9 0 .........................G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 99.3 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TCAAACGGACTAAAAGAAACGCCGAAACGGCCCACAAAAATTTGACAAAACACACGGGGAGCGTGGATTGAAATGTAACCACCGGCACACCACCGCAATTGACCGGCGGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACATATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //