Array 1 410203-407201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUX010000001.1 Campylobacter concisus isolate 2010-113332-O, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 410202 30 100.0 37 .............................. ATAAATTCATAAAATAAAATTCATATCCTATTTTTAT 410135 30 100.0 36 .............................. TGTATAATCTCCACTTGTGAGCCTGTTCCATATACT 410069 30 100.0 37 .............................. AAAAGTTATGTTTTTTAATCGCACCGAGAAAAATGAC 410002 30 100.0 36 .............................. CAAAACAAGAAGCCAGCCAAGCACCAAAAGCTGGAC 409936 30 100.0 38 .............................. GTATTCAGTATTGCCTTGTTCGTAAGCGTCAGGATCTA 409868 30 100.0 34 .............................. GTTGAGAATTTTAGGGATAAACCTTTGTCATACT 409804 30 100.0 34 .............................. GTTGAGAATTTTAGGGATAAACCTTTGTCATACT 409740 30 100.0 38 .............................. TCTTTCAGTCCTTGAAATTTTATCAACCAAAACAACTT 409672 30 100.0 34 .............................. CAGGGCTGATTTTCTTAGTCGCTTTACTTCAATC 409608 30 100.0 34 .............................. TCGATCTTAAAAACTACGTTGTCGAAGATGTCAA 409544 30 100.0 38 .............................. TGATTTGCGCCACAAGTAGCAAGACGATCACCCAAACG 409476 30 100.0 37 .............................. AGATTTATCGGTTTCAAATAAAGACATTACGACAAAA 409409 30 100.0 37 .............................. AAAAATTTATCTTTGGCTTTACGCTTACGTTTTTAGA 409342 30 100.0 38 .............................. AATACATTTTTTCACGAAAAAAGCTATTTTTTTATTAA 409274 30 100.0 38 .............................. GGTGCGTAAATCCGTTTAAGAGGGTGCGAAATGAGCGA 409206 30 100.0 35 .............................. TTATCCCAAAACTCTCGTTTATAAAACTCATAGAC 409141 30 100.0 38 .............................. GAACATGGTATTTAGATCATAATCAAGGTTTATATTTT 409073 30 100.0 37 .............................. GCTTATCTCAAAAATGCCTTTAATTACGCCTTTGCCG 409006 30 100.0 37 .............................. AAATTCGCAGGCAAAGAGACGTTAGTGCTACAAATTT 408939 30 100.0 35 .............................. AAATTGAGAGCGGGAGAGTGGTTTGCTACTCACAT 408874 30 100.0 35 .............................. TCAATCAAGAGATATCAAAAAAGCTAAAATGGCTT 408809 30 100.0 37 .............................. CCGAAGGTTGCTATTCAGCTATTACACTTTTTAGATT 408742 30 100.0 34 .............................. TTCGCTTCTTTAGCTCCCGGTTCTCTTGTTGCTG 408678 30 100.0 38 .............................. TCCCATATGATCTAGGGCTTTATACATGCTATCAACAA 408610 30 100.0 34 .............................. CCAGATGATCCTAGAATTGATAACCATTTAAAAG 408546 30 100.0 35 .............................. TTTTATCATTAAAAAGAGAGAGATAGCCGATTTTC 408481 30 100.0 36 .............................. CCAAAAGCAAAGCCAAATAGGCGTTTTTATAGCCAT 408415 30 100.0 35 .............................. TATTTTATCCGATCACATCGATTTTGACTTACATT 408350 30 96.7 35 .........................T.... GTGGCCGTATTGAATTACCAATGGGTTTTATTTCT 408285 30 96.7 34 .........................T.... AGCGTTCTTTCATCTCACAAAGTCCAGCATCAAC 408221 30 96.7 38 .........................T.... GGCAAGAGCCTAACTCAAACAGCAGAAAAAACAAAATT 408153 30 96.7 36 .........................T.... AATACCCAGTCGCCGTCATCGTCGCTTCGTTCATCA 408087 30 96.7 34 .........................T.... TTTTTTCGTGCCACTCATGGCTTTTTGCTTCGTG 408023 30 96.7 37 .........................T.... AAGTGATAAGGTAGTCCAGCATAATCAAACCACTCTT 407956 30 96.7 35 .........................T.... AAAGCTAACAAACTGCTTTTCAGACTTATCACGAT 407891 30 96.7 37 .........................T.... TTTCACTTGCAAATATGGGGCTTGGTAAAGTTAGTAG 407824 30 96.7 37 .........................T.... TCTTAGTTCTTAGTGGCATAAACAAAAAGACCACTGC 407757 30 96.7 35 .........................T.... TATTTTAAATCTCTTCTCTGAAAATTTTTGACTTT 407692 30 96.7 38 .........................T.... TCTTTTTGATAATTACATTAGTTATTACGAGCTTATCT 407624 30 96.7 36 .........................T.... TTCTTACTTTAGAAAAGATATAACCTTTGATATTTG 407558 30 96.7 35 .........................T.... TGGCTCTTGTCAAATTAATAAAAAACTCTTACCTT 407493 30 96.7 35 .........................T.... TGCGGGTATACAAAACAAGCTATTATATACGCATT 407428 30 96.7 35 .........................T.... TCGTTATCTTTATTTTTAAAAATGCCAAAACCATT 407363 30 96.7 36 .........................T.... ATTTTGATTATTCAATAGCCATTCAAAAACGCTTTA 407297 30 96.7 37 .........................T.... GATTTTGTAGCCGATGAAGAAAACCAAGCTATTTTTT 407230 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 98.7 36 GTTTCAAACTCCAACGGAGTAAATTCTAAT # Left flank : CTAAATCTAAAAAAGAAAAACTTAAAGAAAAACTAGAGAAATAAAATATTTTAAGGCCTGCTGTCTTTTACAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGTAGGCTTTAAAAATTCATATATTTTTTGTTTTAATTATAATTGACAAAAAATTTCACAACACTCTTTAAATTTCATTTATCCGATAATTTGCTTCATTTTATCTTTGATCAAGTCGTTTTTCTAATTTGTGTCAAATATAAACTTTAAAACAAGAACTTATACTGTCCCTTT # Right flank : AGCACCAAAAAGCTGATTTATAGGCCTTTTGATGCAAGAAGTCTATATTTTTTCGCCTTAAATTTGACTAAATTTTAGCCATGTATAAATACGCCAAGCCCTAAATTTCAAGCTTTTTAAAATCTTAAAAAACGCTTTATTAAAATGCGATTTCACTCCCACCCAAAGCCTTCATAAGGCGCGTCCTCGCAGATACACTTTTTAAGCTTATTTGCTTCGCGTCGGATCACCTGCCTCCACGTTAGCTCCCTACCGCCCACCGTGAGCGTCTCGCAAAGGCGCGAGATCATCTTTAGCTCGATCTTTTGCACGGCGTAGTTGCTAAATTTTATCCTGCCAGCGTCCGTTTGGAAGTCTTTTGCGGTGATCTCTTTTTTATTTAGCATGTTAAAAATCAGCGTATCTCCCAAGATCGGCTTAAAAATCTCCGCAAGGTCGAGATGTAGGCTTAGCGCGCGGTAGTTTGGCTCGTGCAAAAAGCCGATGCGAGGATCTAGCTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACTCCAACGGAGTAAATTCTAAT # Alternate repeat : GTTTCAAACTCCAACGGAGTAAATTTTAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 469857-470422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUX010000002.1 Campylobacter concisus isolate 2010-113332-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 469857 37 73.0 39 TCA.TGTT..........T..C..........A.... AGCACAGTAATGTTGGCAACTTGTATGATGGAAGCTAAC 469933 37 91.9 41 ....................T.CT............. ATCTTATCTCCGTTCATTTCTAGAATTGAGACTTGCATAAC 470011 37 94.6 38 .....................CC.............. AATTTTGTGATCCAGCTTTCTGCACCACTGTCGTTCAC 470086 37 94.6 37 ..........C...........C.............. AAGCTAGAAGGGACTTTCACGTAGATGTGATCTGCCC 470160 37 100.0 37 ..................................... AAGCTAGAAGGGACTTTCACGTAGATGTGATCTGCCC 470234 37 100.0 39 ..................................... GCAATAATCCACTCCATAGTGTCTCCTTTTAATAAAGTT 470310 37 100.0 37 ..................................... AGTTTTGATGCACAAATTTCGCACCTTTTAATTTTTT 470384 37 86.5 0 ....................C.CC.........CG.. | A,A [470414,470416] ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 92.6 38 ATTTAAACAAATTTGACCCGATTAAGGGGATTGAAAC # Left flank : CGCTTTTTAGCGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATATCTCATCTAAACTCCTTATATTCACATATTTTAAAGCTACGCCCACTATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTGGTAGTTTTATCAGCACGCCAAGGCTAACTCTTGCTGCCCTTATATAGCGAGAAAAGGTCAAAATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTGTATATTTTTCGCACCTTTATCACTCTTGGTTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAACTTGTGATTTTAAAGCTATTTAAAATAGGTTCTTTTTGCTTA # Right flank : CCCATACCACACTTAAAAGGTAAATTCAAAATGTTTACTAAAAACCTAGAACACATATTTACAAAAGGTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGATGAGATCTCATATGCTGATTTTAAGAAAAACTTTGACGAAAACGCAGATCATCTCATACGATCAATATTAAATGCCACCTACACGCCAGAACCGCTAAGAAAGATAAACATCCCCAAAGAAAATCGTAGCGGAGTAAGACCCATAGGCATATCCTCCATAAAAGATAAGTTGATTCAAAGAGTTTTATACTCGGAGTTAAATCCATATTTTGACGAAACGTTTTTATCAAATTCCTATGCCTACCGTCCAAATAAATCGACTTACAAAGCCATAAATAGAGCTAGTAATTTCATAAACGAGGGCTACTGCTGGATACTAAAAGCCGACGTAAAAGACTTTTTCGAGTCGGTAAACCACTCAAAGCTACTACAAATTTTACA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 473406-475774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUX010000002.1 Campylobacter concisus isolate 2010-113332-O, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 473406 37 100.0 38 ..................................... GTCTTGGACTTCTATTTCTAATAAGTCCGCAGCCTCTA 473481 37 100.0 40 ..................................... ATCTCTACTTCACAGAGTTCCGCTACTTCAAGTACAATAC 473558 37 100.0 38 ..................................... GAATATACTCTACCTCTCTTATCATAAGCCCACTTGAA 473633 37 97.3 35 ......................C.............. TCTTCAACTTTGACGCCGAGATACTTCGCACTAAA 473705 37 97.3 37 ......................C.............. AATTCGCAGACCTCTAAGGTAATATTAGCAGCTACAT 473779 37 97.3 39 T.................................... TAAGTTGCTCAGCTCTACCTCGCCTAGACCACTAGGCAC 473855 37 97.3 35 ......................C.............. TCTTCAACTTTGACGCCGAGATACTTCGCACTAAA 473927 37 97.3 38 ......................C.............. AAGACTACGTTGGCTGCAATACTAGCAGCTGCCTCTTT 474002 37 100.0 41 ..................................... ACTAAGCTATTCTTAAGCTGTCGATGCCTACAGATTTAAAT 474080 37 100.0 37 ..................................... TAGGTAGGTAATTTAAAGAACGGCTTATTTTCTCGCC 474154 37 100.0 39 ..................................... GCTTATTTTCTCGCCGTTCATTTCAAGAACTGAGATTAA 474230 37 100.0 39 ..................................... AATCTCGATCTCGAATAGCTCAGCAGCTTCAACTGCTGT 474306 37 100.0 37 ..................................... CTCGATCTCGAATAGCTCAGCAGCTTCAACTGCTGTA 474380 37 100.0 38 ..................................... CTACTTCACAGAGTTCTGCTACTTCAAGTACAATACCT 474455 37 100.0 35 ..................................... ACGTTTATGTATCTCAGCTAATAGAGGCTCATAAT 474527 37 100.0 36 ..................................... CTACGATGTTCTCGTCTTTTCTGCTTTGCAAATAGC 474600 37 100.0 43 ..................................... CATCTTGACGGGTTTGGAGGTATGTAAGAGTCTCCTCTGGTGT 474680 37 100.0 39 ..................................... ACTGCTTAACAGCAGCTAGAGCTTCTTCAGCATTCTTAG 474756 37 100.0 36 ..................................... ACCATTTTGTGGTCTTTGACCACAATATTGTAGTAT 474829 37 100.0 38 ..................................... CAGATGGCAGATAGTTGAGTGAACGGCTTATTTTTTCG 474904 37 100.0 40 ..................................... TTTGAGACAATGTTGTAGAATGCTCTACCTTGTGGGAGAT 474981 37 100.0 40 ..................................... GCTACAACGTTGTAGTAATTCCTACCTTGCGGTAGGTAAT 475058 37 100.0 40 ..................................... CTTTGATGTCCTGAACTTCAATCTCTAGGACATCACACAC 475135 37 100.0 37 ..................................... CCTACGCTATGAAATTGGCTAGGGACCTTCACATAGT 475209 37 97.3 40 ......................C.............. TCTACCGATTTGTTCTGAGCACGAAGACCTTTCTTCGCTA 475286 37 97.3 35 ......................C.............. ATACGTTTGTTCTGTTTAGCTAAGCCTTTCTTAGC 475358 37 97.3 38 ......................C.............. CTTTTTTCTTGTTCAAAAGCAACTGATCCATCGTTATT 475433 37 97.3 39 ......................C.............. TCTTTAGTTAGTGGCCTGATCGTAATTTCATAAGGCAAT 475509 37 97.3 39 ......................C.............. AGTTTGTTGTATGCTTCTAGGCTGTTACTTGCTACCATT 475585 37 97.3 39 ......................T.............. ACTTGAACTTCTATCTCTAGAAGCTCCGCTACCTCAAGG 475661 37 94.6 37 .....................CT.............. ACTTCGGGCGGTATGATGGCATCGATGTCTAGGATGT 475735 37 94.6 0 ......................C.............T | C,AA [475765,475767] ========== ====== ====== ====== ===================================== =========================================== ================== 32 37 98.7 38 ATTTAAACAAATTTGACCCGATAAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCAAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGAAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTGGTAAAGTTGTAGGTAGTGGCTTATATTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTGGATAAGAACAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATACGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGGTGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTTACATAGACTACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTACCCTTAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATAAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //