Array 1 29324-26652 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVP01000026.1 Streptomyces cirratus strain JCM 4738 sequence26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 29323 29 96.6 32 ..........T.................. ACCACGCGCTCGCCCTTGGACTTCCTGTCGAG 29262 29 100.0 32 ............................. GACAGGGAGTCGGCGATGCGCGGGAGCATGGC 29201 29 93.1 32 .................T..........T GGGCGCCGCGCTGGCACATCTCCGGCTCTGAC 29140 29 82.8 30 .............T...........CGAT GTCGAGCGTCGGAGCGGACTGGCGCACCAA 29081 29 93.1 32 ..........T.................C ACCTTCGCGGTGTGGAAGCTCGTCCCGGACGC 29020 29 100.0 32 ............................. TGGGGCGCCACTTACTTGGGATGGGCTCCGCC 28959 29 89.7 16 .........A.................GC TGACTGCCGCCGGTTC Deletion [28915] 28914 29 86.2 21 ......T..T.......A.A......... AGCGACAAGCAGTCGGGGCGC Deletion [28865] 28864 29 96.6 32 ..................C.......... GGGAGCACCAGACCATGACCATCGGACGCCAC TGTAG [28852] 28798 29 93.1 32 .............G..........T.... ACGATGCAGATCACGATCGAGACGATCCTGCT 28737 29 96.6 32 ............................T TGACCACGATCGACGGGGCCTCGGCCCCGGCC 28676 29 100.0 31 ............................. CCCCCCTCAGCCCTGGGCAAGCCCGGCGGGC 28616 29 96.6 32 ......A...................... GGGAACGCGCCGGCCGCGGTCGTCGTCGTGGC 28555 29 96.6 32 ............................C GATCACTGGGATCCGGGCGCCATCGACACCGC 28494 29 89.7 32 .................T........T.T GCGCGCCCGCCGACGTCGCACGGGGGCACGCA 28433 29 93.1 32 ...................A........T GCGAACCCGGCCGCCCGCACGGACTGGGTCCT 28372 29 100.0 32 ............................. AAGCTCGGCTACGCGATCGAGCTGATCCCCGG 28311 29 93.1 32 ..........................T.C TGCCCGGGGAGCCCCGGGCATTCGTATGGGCA 28250 29 96.6 72 ............................C TCGTCTATGAGCGCTCGGGCTTCCCGCTGGACGTCGTCCCGTGGCCGGCTTCTTCTCCTCAGCCTGGCACGC 28149 29 93.1 31 ....G......................G. CCGTCGACCGCTACCGCAAAGGGTCGCGAAA C [28123] 28088 29 93.1 31 ....G......................G. GCGGTTACGACAAGGGCGGCACGTACGTGAC C [28062] 28027 29 82.8 32 T...G.......G..........G..T.. TACCAGGAGGACTGGGACCTCCTGCACTCCGT 27966 29 79.3 32 ..GC........G.......A..G..T.. CTCCCACCGCGGTACGCCCGGCGTCGGCGACC 27905 29 79.3 32 ..GC.G......G..........G..T.. CCGTGACGCCGCGCGCCGACAAGACGCAGTCG 27844 29 82.8 29 ..GC........G..........G..T.. ATGTCGTTGTGCGGGTGGTCGCCGACGTA 27786 29 86.2 32 CAG.........................C CTGGACAACGGGGCGCCGCAACCCTCAGATCA T,G [27779,27781] 27723 29 100.0 32 ............................. TGCAGCTACGCCGCGCGGGCGCGATGGCCGCC 27662 29 100.0 32 ............................. AGCCGGCCGTCCTGGCCGTCCTCGACCAGCCG 27601 29 100.0 32 ............................. ACCGCCGACATGCGGATCCCCGCCCTGCTGGC 27540 29 96.6 32 ..................C.......... CAGGCGCAGACCGCCGAGCCCGGCAGCATGAT 27479 29 100.0 32 ............................. CTCAAGTCCATCGGCTACCCGCTCGATGTGAT 27418 29 96.6 32 ..................C.......... CAGGCGCAGACCGCCGAGCCCGGCAGCATGAT 27357 29 100.0 32 ............................. TGCCTCGACCTCATCTCCGAGCGCCGCCACGT 27296 29 96.6 32 ............................C CAGGAGACCGTCACGATCTCCTCGGTCGGCAT 27235 29 100.0 33 ............................. GCCCACGCGTTCGGGCTCATCCGGTGGCGGCTC 27173 29 100.0 32 ............................. ATGGGCCCTTCCGGCACGCTGCTGCTCGATTC 27112 29 100.0 32 ............................. GGTGAGCCGGTGTTCAACCCGGATACCGGTCA 27051 29 93.1 32 .......................G.A... CCGCGTGGGTCCGGCTTGCCCGGCTGCCATTC 26990 29 82.8 32 ..GC........G..........G.A... ATGTCAGAGGTCTTCGTCTGCCCCATGGAGGC 26929 29 82.8 32 ..GC........G..........G.A... TCTCGGATGGTCGGCTTGGTCGCCTTGTACGA 26868 29 82.8 5 ..GC........G..........G.A... GACCA Deletion [26835] 26834 29 93.1 13 ......A.....................C TGGACATTGCTGT Deletion [26793] 26792 29 86.2 32 ........T...T.........G.....C TGGAGGAGGTAGAGGCCGAGCTGCGCCCGCTG 26731 28 86.2 22 ........-..............G...GA GGTCCTCGCTCACGATGGCGAG A [26706] Deletion [26682] 26680 29 72.4 0 ..GC...T....G.......CC.G..T.. | ========== ====== ====== ====== ============================= ======================================================================== ================== 45 29 92.4 31 GTCGTCCCCGCCCACGCGGGGGTAGTCCG # Left flank : CACCGCCAACCCCGTCCAAACTCTGCGACGCCCGGCGAACCCCAGCGCCGAGCAAGCCGCCCAGTTGGCCAAACGTGACGCCGAACCGGGCACCGCCGCAGAGCGCGGCGTCCGCGGCTTCCGGATGCCCCACCGCACCGCCCGGCAACAACTCGACTGGCTTCTCGAACGGACCGAACGCCACGGCTTCACCATCCCTGCCATCAACGAATCCGCCCCCGCACCCGGCCTCGGAGAACCGGGCACACCGGCACCAGCCGTCACCCTCACCGCCCGCGACGTCCTGCGCTTCCGCAAAGGCAGCACCGGGCCACAAGTGACCCTGTCTACTGCCACCTACCAAGGCCGCCTGCAGGTCACCGACCCCGACACCCTGCGTCACACCCTGCTGAACGGCATCGGCCCCGCCAAGGCCTACGGGCAAGGCCTCCTCACCCTCGCCCCAATCCTCCAAGAGCAGCCCGATACCTGAACCATGTGGAAGGCCACACCGCTTACGC # Right flank : CAGTGGCCGCCGAAGGCGACTGCGTCAGCTGCTGTCGTCTTCGGCGGCCCGCGCCCTAGGAAGGCGCGGAGCCACTGGAGGCGGGGACATCGTCAAGGTCGGGCGGAACTCGGGAAGGGGGCTCAGATCACCGGGGGCCGGCCCAGCCGGGTCATACGCCACACTGTCCGCCACCGCATGGGACGCCGTGGCGGGCAGGGCACCTGCACTCCCTCGAAGAACCCGGCCCACCAGGCTTTCAACCCTGCCGCCGGGGGCCGCTGGGCCAGGGTGTACGTCGCCCAGGAGGCGAGGTAGACCGGTACGAGGATGGCGGGCAGGTGCCGTTTCGCCAGCCAGACGCGGTTGCGTGCGGTGTTGCGGTAGTAGACGGCGTGGCGGGACGCCGGGGTCCGAGGGTGGGTCAGGACCATGTCCGCGCGGTAGTCGATGTCCCAGCCCGCGTCGAGGGCGCGCCAGGCGAAGTCGGTTTCCTCGTGGGCGTAGAAGAACTGTGCGGG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCACGCGGGGGTAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 39181-39756 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVP01000026.1 Streptomyces cirratus strain JCM 4738 sequence26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39181 28 75.9 32 T..-G...T...C..........A.C... GGCGACATGACGGAGCGCGTAGCAGGCGACAC 39241 28 79.3 32 ...-G.......C.T........A.C... TACGGCGCCCTGGACGAGATCCGCACCAGCCG C [39243] 39302 29 89.7 32 ..C.G............C........... AGCGACGACCCGAGCACCACCAACGCGCGCCA 39363 29 93.1 32 ............C.............C.. ACGGTCTACGACATCGCCAACGGGCAGACCGG 39424 29 93.1 32 ..................C.....C.... GCGACGTCCAGGTCCAGGTCGGCGAAGTTGGG 39485 29 96.6 32 ....G........................ CCGGCGACGCCGAGGCCGACGAGGACGAGCAC 39546 29 93.1 32 ....................TA....... GACGACCCCGTCACCAAGGCCCACGTCAAGGA 39607 29 96.6 32 ............................A GTCTCCGACGCGGAGGCGTATGACCCGTACGC 39668 28 96.6 32 .....-....................... CAGGCGGGCCTTCTCGTTTCTTGACATGCCCT 39728 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 91.4 32 GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Left flank : CGTGACCGCCGAGGTCGGCCCCGCCCACGCGGGGGTAGCTCGCGCCTCGCCCCCAACGTCGGCCTGGCCAGGATGTCGGCCCCGCCCACGCGGGGGTAGCTCTATGCGGCGTCCGTGCTCGCGGACCCCGCTGCCGTCGGCCCCGCCCACGCGGGGGTAGCTCTACATATTCGGTGAGCGTGCCGATTTGGGCGAGGTCGGCCCCGCCCACGCGGGGGTAGCTCTGGGAAGGCCCCCAGACCCTCGCCGCGCTCCGCGTCGGCCCCGCCCACGCGGGGGTAGCTCCGCCCACCACTGCTGGCACCGCGTCGAACCCGCGTCGGCCCCGTCCACGTGGGGGTAGCTCGCGTATGGTGTCGCTGTTCTACGTCGGCCCGGAGTCGGCCCCGCTCACGCGGGGTAGCTCCCGTATGGTGTCGCTGTTCTACGTCGGCCCGGAGTCGGCCCCGCCCACGCGGGGTAGCTCTCAGAACCGCTGGGGCTTCGACGGCGGCGAGGAG # Right flank : GGGGGCTGGAGGGTTGCACGTAGAGGTGCACTAGGGGCTGTCCTGGCGATCACGAGCGGAGCCAGATGACGAGTGCGGCTGCGGTAACGGTGCCGAGGTAGACATAGCCGCGCTTGTCGAACCTGGTCGCAACCGCGCGGAAGGTCTTCAGCCTGTTGATCGCCCGTTCAACGGTGTTGCGCTTCTTGTAGCGGTCCCTGTCGAAACCGGGCGGCCGACCCCCGGCGCTGCCGTGTCGGACCCGGTTGGCGGCCTGGTCGGCCTTCTCCGGGATGACGTGCCGGATTCCTCGTCTGCGCAGGTAACGGCGGGTTCGGCGGTTGCTGTAACCCTTGTCGGCGCTGACACTGTCCGGCTTGGTGCGCGGCCTGCCGCAGGTCAGCCGCGGCACGCGGATCCTGTCCATGACCGACTCGAACTGGGTGCAGTCGGCGTATTGGCCGGGCGTGATGACCAGCGAGAGCACCCGGCAGCGGCCGTCCGCACTCAGGTGGATCTTG # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 41546-44070 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVP01000026.1 Streptomyces cirratus strain JCM 4738 sequence26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41546 29 100.0 32 ............................. GCGGACGCTGTCTATCTCGCTGGCACCCCGGC 41607 29 100.0 32 ............................. GCGCCCCGACGCCTGGGAACCTTGCCCCCTTG 41668 29 96.6 32 .......................A..... ACCGATGCCTGAGCTTTGTCGATGACCAGGGC 41729 29 96.6 32 ......................C...... AACTGCGCCTTGAGGCCGACGAGCCCGGGGAG 41790 29 100.0 32 ............................. TCCCACGGGACAGCAGCCACACACTGACCTCG 41851 29 100.0 32 ............................. AACAGCCGGCCGTCGTCCTGCTGGGTCAGCAG 41912 29 96.6 32 .............G............... GCGATGACCGGCGAGCCGGTGCTCATGTCGCT 41973 29 93.1 32 ..A........T................. AGCGCGGAATCCGTGCTCCACCTCGCGCGCTC 42034 29 100.0 32 ............................. AGGCCTGAGACAATGGAGAGGTGACGGTTCAC 42095 29 100.0 32 ............................. CCGCCCGCGGCGCGCCCGGTCCGCTGGTTGAA 42156 29 100.0 32 ............................. CAGCAGCGACGGCGACCGGCACGTCCTCGTGT 42217 29 100.0 32 ............................. TCCCGGAACGGGGGCGGGGCCAAGCCCTTCAA 42278 29 100.0 32 ............................. TCGGCCACGTTCTTGCGGTCGGACTCGCCCCA 42339 29 100.0 32 ............................. GGGTCCGCGACGCCAGGACGAGCACGGCCAGG 42400 29 100.0 32 ............................. TACGAGATCCACGTTCACGAGGCTCGAAACGA 42461 29 100.0 32 ............................. TCGGTATCCAGGACCCAGCTCATCTAGATCAT 42522 29 100.0 32 ............................. ATCGACTCCATCCTCCGCCAGCACCACCGCCG 42583 29 96.6 32 ...........T................. TCGTCCGGGCGGAACTGCGCGGCCGCAGGGTC 42644 29 100.0 32 ............................. TTGTAGCCCACCCCGGCCCAGTCCTGGGCGAG 42705 29 100.0 32 ............................. GGCACCGTGCAGGCCGGAGTCGAGGTGGAGCC 42766 29 100.0 32 ............................. GGCACCGTGCAGGCCGGAGTCGAGGTGGAGCC 42827 29 100.0 32 ............................. TCGGAACCTGCCCCCAGCAGCACAGAGGAAGA 42888 29 100.0 32 ............................. CCGACTTCCAGCGGAAATACGGTCTCGGCCCG 42949 29 100.0 32 ............................. GTGCCGGAGAGTTCGAGGCGGGTGGACTGGAC 43010 29 100.0 32 ............................. CGCGACGCTCAGCGTGCGGAGGAGGACCTCAC 43071 29 96.6 32 .......................A..... AACTGGCCGACACCGGGCTCGCCCCCGAGTGC 43132 29 96.6 32 ........T.................... GGGCCCATGCGCGAGGCGCGGCCCCGGGTGGT 43193 29 100.0 32 ............................. GGGCCCATGCGCGAGGCGCGGCCCCGGGTGGT 43254 29 100.0 32 ............................. CCGCGAGGCAGGCTCAGGCCGACGCCGCGCGG 43315 29 100.0 32 ............................. GGAATAGGGGATGCCCGCTCCCGAGATTGCGG 43376 29 96.6 32 .....T....................... ATGCGGCGTGGCTGGTTGTCCCGGCCGAGGTA 43437 29 89.7 32 ........GT.........A......... TGGAGGGCGCTGACCAGGGGGCGGTGCGAGCG 43498 29 96.6 32 .........................A... TCAGCCGCGATCGTGGCCCAAATCCAGCAGAC 43559 29 96.6 32 ..............T.............. CTTGGACTGCAAGTCGTCCACGTCGAACCACG 43620 29 96.6 32 .................C........... CGGGAGTCGAGGACGGGGAACGTGTCCGGGTC 43681 29 96.6 32 ........................A.... GACACCGTCACCGCCGCGCTCACCGAGCTGCA 43742 29 96.6 32 A............................ CCGACTTCCTGCGGGAGTACGGGCTCGGCCCG 43803 29 82.8 25 ......................C.A.CAT CTGGTCCAGCATGGCCTCTGGCACT C [43824] Deletion [43857] 43858 29 96.6 32 ......................C...... CCGGTTCTCACCGGCGAGGGCAACCTCAGCCA 43919 29 100.0 32 ............................. CGGGCCGACGCCGAGTCGCTGACGTCCTACGC G [43921] 43981 29 100.0 32 ............................. GCCAGGGTGTAGGAGCCCCGGCCTTTCACGTG 44042 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 98.1 32 GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Left flank : GGCGGGAGACCCGGGTGATGAGCGGGAGTATCCGATGTACCCGGACGAACTGACCTCGCCGTATCTGGACCGCTTCTCCGCTGCGGCGGCTCAGCGATACGAGGCGCTGGGGATTGAGCGCGACGACCCCGAGCGGCCCCAGAAGATCGCTACCTTGAACTCGGAGGCGTTCGGAGCGCCGGTCGTCTTGTTCTGCTACCTCGACCGGACGATGGGGCCCGGCCAGTGGGGTGATGCGGGGATGTACTTGCAGACGCTCATGCTGTTGCTGAGGGCGGAAGGGTTGCACAGCTGCCCCCAGGTGATGTGGACCATGTACCGCAAAACCGTCAGTCGAACAGTCGGAGCCGATGACGAGCTTGTGCTGTACTGCGGCATCTCAGTGGGATTTGAGAAGGAAGGCGTGCCAAGGCTGCGTACCGGGCGGGCGGACATGACGGAAACGGTGAGCTTCATCGGAGTGTGACCGCTGACGGCCGAGATCGACAGGACAGGGCCTA # Right flank : GATCGGCCGGAAGGCCCACCCGCCTTTGCTGCTGTGCTCCCCGCTAACGGCATCCTTCGTCTCCCCGGTCCACGTGGGACCGGTGAGCGGCCGGGGCCAGATCCGTCGGAGCAGCATCAGCCCGGCCGGGGACGGGCGCGGCGCCGGGCGGCAGAATCCGCAGCGAGCTCACAATGGTGCGGCCCGCCGCCTTGTTGGCGGCCGCGATGGGGCGGGCCTGATCCTGCCGGGCCTTCGTCGCCCAGCCCGTCGACTCCGGACACACGGTGAGCCGGCCTGAGTCGATGTTGTACGAACTGCGATGACGTGACTGGCGAGCTCGGGAGCAATGGCCGCCCACCGCTCCCGCAGCATCGCGCCGGCGGCCGGGAGCTCCCAAGCCCGCTCGGTGACCAGCGCACCGATCGCCGCCCCGAGCCTCCATCGCGCCGAACCGTCGTGACGGCACCCAGCACCACCTTGGCCAGGTCCACGCCGGACACCTCGACGCTTCTCATGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //