Array 1 1387303-1386342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039457.1 Streptococcus pasteurianus strain WUSP067 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1387302 36 100.0 30 .................................... TAGCAAGATGACGGACGTTCAAGAACAATT 1387236 36 100.0 30 .................................... CGGAGCTTTGGTTGACTTCTCACTAGTTGA 1387170 36 100.0 30 .................................... ATTGAAACCTATGATTATTCAGAATTACAA 1387104 36 100.0 30 .................................... TTAACGTGGTAGGTATTGCTAAATTTATTG 1387038 36 100.0 30 .................................... AATATTATTACGACTTTCATGTAATGTGGT 1386972 36 100.0 30 .................................... CGGTTGGCTTGTTGGGAAACCCTATTACTT 1386906 36 100.0 31 .................................... CCTGGAACATTTCAAGAATACAACCAGTTAA 1386839 36 100.0 30 .................................... TGACGTTCCGACAAGTTCTGCTAATACAAC 1386773 36 100.0 30 .................................... CGAATATTTGAAGCAAGACCTTACAGATAA 1386707 36 100.0 30 .................................... TCACGACATGGGGCTCGGGAAAACGTACAC 1386641 36 100.0 30 .................................... AAATCGGAGTGTATGAAAATTACTACGATT 1386575 36 100.0 30 .................................... ATGCACGATTACTATCTTTCTATCTATATT 1386509 36 100.0 30 .................................... AAGCCATATGTTGAATAAGCATGCGCAACG 1386443 36 100.0 30 .................................... CAATTTATCATCTAACGTTAAGAAGCTCAA 1386377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTTGAACGCGAAATCGCCCTCTGGTTTGGAGAATAAATAAAAGGAATTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : TCATTCCTCCTAATTAGAGGTAGACCGTGTAGTTTTATAGCTGTGCTGTTTATTTTACCATCTTATGATGCTTTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACACATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1389829-1387944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039457.1 Streptococcus pasteurianus strain WUSP067 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1389828 36 100.0 30 .................................... AGATATGATTTTTCATATGAACTATGCCAA 1389762 36 100.0 30 .................................... TGGTCATAGTATACTTGTTAAAGATATGTA 1389696 36 100.0 30 .................................... GGTTCAGTCATTAATATTGACGGTGAGAAA 1389630 36 100.0 30 .................................... TTTAACAAGCACAGTATGACCCAATCCATG 1389564 36 100.0 30 .................................... TGTTTCTGATTCAATAAGCATTGCAACGTG 1389498 36 100.0 30 .................................... TGGGCAATATCTACGAAAATCCAGAGCTTT 1389432 36 100.0 31 .................................... GAATGTTCCAACGAGCATGACACCAAGCCTG 1389365 36 100.0 30 .................................... ATTTCAAACGCAGGCTATAACAAGATTGAT 1389299 36 100.0 30 .................................... AATAAAACTTTCTACAAAATAAAAAAAGCA 1389233 36 100.0 30 .................................... CCCATACAGTTTGATGATTGATTCTAGTGC 1389167 36 100.0 30 .................................... AAAAGAAAAAATAATAAAACCGTTGGACGA 1389101 36 100.0 30 .................................... CGAAAGCAGAACAGAAAGACGTCCAGAAGG 1389035 36 100.0 30 .................................... TTGAGAAAAAACATGGTATGCACGGAACAA 1388969 36 100.0 30 .................................... GACGGAATAAGTGAACCAACTTACTATGTT 1388903 36 100.0 30 .................................... ACCACCATCGTCGCTTGTAGTTGTCGAACT 1388837 36 100.0 30 .................................... AAGCTTTAAAGTGGGTTCTTGAAAACGAGG 1388771 36 100.0 30 .................................... AACAATTGTGCCACTGCACAATAAAGACCT 1388705 36 100.0 30 .................................... AGGCGTTAACGCTAGCTTATTTAGCGGTCT 1388639 36 97.2 30 .................C.................. CACAACCGGATAAGTGCCAGCTGGAATTGC 1388573 36 100.0 30 .................................... TTGTTCTGTCATATTCTCACCCCCTTTCTA 1388507 36 100.0 30 .................................... TATCGTAAACGAAAACATGACTGTCATTGA 1388441 36 100.0 30 .................................... GTTGACTGGTGGCGAGATTACGAACGCACT 1388375 36 100.0 30 .................................... GGCAGAGGGATATTAAAATGACTAATTTAT 1388309 36 100.0 30 .................................... TTGAAAATCAAATTTAAAAGCTTCTGGACA 1388243 36 100.0 30 .................................... CTGCAATGTCGCCGAATTTTGTAATGGCGC 1388177 36 100.0 30 .................................... CTCACGGCTCGAAGAGAAATTCGACGATAA 1388111 36 100.0 30 .................................... TGTCCACAAATACATACCTTTAACTAAAAC 1388045 36 100.0 30 .................................... AAACATTTCTGGCGTATAGTTCAGCTCCTT 1387979 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATATAGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATTTAGATGAAGGGTTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTGAAGTTGGTTTTATTACTTTAATTCAAGCAGCCCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTCGCTGATCGAGAATATGTTAATTATTCAGAATGTTTGGCACAAGTTTTAGAGAAAAAATTAAAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGTTTTTTAGGTATAATATAGTTAAAAATAATGAACTATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTTGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTGAGCAGAAATAGTATTCTCAGAAACGTACTAAATTTTAGTGAAAACGCCTTTCAACATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCGCTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAACGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTCCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAAGTGGCGCAACATTTAACATCGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //