Array 1 125861-125646 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000001.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 125860 28 100.0 35 ............................ CCACCACTTCCGGGAGTTGGCGGGGGCGTGTTCGA 125797 28 100.0 33 ............................ TTCGGCGCGACCGCATGGACGGCCTTCGTCGAC 125736 28 96.4 33 ...A........................ GCCGGGCTCCGTCGCCGCGGGGCTGGACGGCGC 125675 28 85.7 0 .......A.T.C...C............ | GC [125651] ========== ====== ====== ====== ============================ =================================== ================== 4 28 95.5 34 CCCGCCCCGGGTCGCGCACGGGGGCAGC # Left flank : GAGCCCGGCATCCCCGCCGCGCCCCGTTTCGACGAGCGCCTCACCGTCCCCCGAGCCTGGTGGCTGATCACCGCTCTGGTGGCGGTCTCCGGTGGTCTGGTCCTTCTGCCGCTGGGGCCGGTTCCGATGCTGGGCGGGCTGATCGCGGCGGGCGCGGTGGCGGCGGCCGGGGTGAGTTCGTACGGCTCCGCCCGGATCCGGGTGGTGGCGGACTCGCTGGTGGCGGGCGATGCCCGGATCCCCGTACCGGCGCTCGGCGAGCCCGAGGTGCTGGACGCGCAGGAGGCGCGCGCATGGCGCTCGTACAAGGCGGATCCGCGCGCGTTCATGCTGCTGCGCAGCTATGTGCCGACGGCGGTACGCGTGCCGGTCACGGATCCGCAGGACCCGACACCGTACCTGTATCTGTCGACACGGGACCCGCGGGGCCTGGTCGCCGCTCTGGAGGCGGCCCGGGGCGGCTGATACGCGGCGGGGGACCGGCCGGAGCGGCAGGCGCC # Right flank : GGCCGGACGCTGCGGCCGGCCCGGACGGGAGCCACCGCGGACGGGAGCCGCCGCGGGCGGGACCCTGCGGGCCATGGGCGCCCGGGCGCGTGCGTCCCCGTGTCCGGATTGCTCGCTTTGCTCGCGCGCGTGCACACGCGCGAGCAGGCACACGGGCACACGGGCGCGCGAGCAGGCACACGGGCGCGCATGCGCGGCTTCAGCGGAGTCGGCCGAGTCGGCCGGAGTCAGCGGTCGAGCTCACGGCGGAGTTCGACGGGGATGGTGTGCGGCAGCTCCCCGGGCTGTTCCAGCCGGGGCTGCGGGGGAAGTGCGTCCCAGGGGACCTGCCGGGCACGCAGGTCCTTGCGGATGCGCTCGGCGAGCTTTCTGGTGTCGCGCCGGTTCATCACGGCACCGACGGCGGCACCGATCATGAACGGCATCAGGTTCGGCAGATTGCGGACCGTGCGCTTCATGATCTGCTGCCGGAGCTCGCGCTTCATCCGGCCGCCCAGGGC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCCCCGGGTCGCGCACGGGGGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 145871-142971 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000001.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 145870 33 90.9 28 .............................GC.G CAACCGATGGGTAGCAGGCTCAACCTGG 145809 33 100.0 28 ................................. CGATGGGGCTGTGCGGGCCGTACCTGAG 145748 33 90.9 28 .............................AC.T GGGGGTTCATGCCTCCCTCACGGATGAG 145687 33 90.9 28 ..............................CAC TTCACGTCGGTTCAGGTTGGCACTCTGC 145626 33 90.9 28 .............................ATC. TTAGGCCACAGCAGTTTTGCGGCATTTC 145565 33 87.9 28 .............................AGCG CCGTCCGCGCCGCCTGATCGGCGCGGCC 145504 33 90.9 28 .............................AC.G ACGACAGCTTGGAGGTCGTCGGCTTCCT 145443 33 93.9 28 ..............................C.G CCGTGGCGTAGACGTGGAGGCGCCATCC 145382 33 87.9 28 .............................ATCG CCGCGAGTCAGGCGCCGGTGTTCTCGCC 145321 33 90.9 28 ..............................CCG TGCCAGCACGCATGTTCACCGGGAACAA 145260 33 97.0 28 ...............................C. GCAACTGCTCCGGTGCCGTGCGATGGTC 145199 33 90.9 28 .............................CT.G TACGGATGACGGCCTCGGTCTTCGCGCG 145138 33 90.9 28 .............................CT.G TGCGCCATCCGGGCACCCGGGCGAACAA 145077 33 90.9 28 .............................CG.C CCTCGGCGGCCCGGAAGTGCGGGAGTGC 145016 33 90.9 28 ..............................CAG CATGAGTAACGGCACTCAGGTCACGATC 144955 33 87.9 28 .............................CCCC CAGCCCCCAGGAGACCAACCGTGCACCG 144894 33 97.0 28 ..............................C.. CCAGTTCCACGTGTCCTCCTGTTCCATC 144833 33 90.9 28 .............................GC.C GGATCGTGGGGGTGGGCTTCGTGTACTG 144772 33 87.9 28 .............................GTAC TCGGCTCCGGCCGTATCCAGCTCACCTA 144711 33 87.9 28 ............................CG.TC ATCGGTGGCACGCAGCGCCCGGCCTGGG 144650 33 90.9 28 .............................CTC. AGAGCAACGGAGTCAACGAGCCCGTACC 144589 33 90.9 28 .............................AC.C GGAGCTGAGGGCCTACACCGGCCTTCAG 144528 33 93.9 28 ..............................GC. TGGTGCCCGGGGCCTCGGGGGACTGACC 144467 33 90.9 28 .............................AC.C CGTAGTTGATCTCTGTGGTGAAGGAGTC 144406 33 90.9 28 .............................CGC. GCCAGCCCTCCCTCCGGTACGCGGAGTT 144345 33 87.9 28 .............................CGCG CGCCGAGCCGATAGCCCGGGGGCACCCA 144284 33 87.9 28 .............................ACCC GCCCCCGGTAGAACACCGGCCCGTCCAG 144223 33 90.9 28 ..............................CAC CAGAGATCCGCTGGTGCTGTGCGACCAG 144162 33 93.9 28 ..............................T.C AATCCAATGGGGGATTCCTGCGGCTCTG 144101 33 93.9 28 .............................CC.. GACCGACGCGCGCCTCACCGACATCGCC 144040 33 93.9 27 ..............................C.G CGGCGGGTCGAGCGGCGGCGCGATCCG G [144012] 143979 33 93.9 28 ..............................GC. CCCAGCCGTACGAGGGCGGCGGGATGTG 143918 33 84.8 28 .C...........................CCCT TGCGAAGGGCCGAAAGAACGAGAACGGC 143857 33 100.0 28 ................................. ACAGACCGCCGCGCTCCACAACGTACGC 143796 33 93.9 28 ..............................T.T ACGTGGGGTGATCAAGGTCAATGCCGGC 143735 33 90.9 28 ..............................TCC CAGACTGCTCGTAGGCAGCGCGATACGC 143674 33 87.9 28 .............................CGCT ACATCCCGGTGTCCGAGGCCCTGCTCCT 143613 33 90.9 28 .............................GT.G CGGCCCTACAGCGGCACTACCTGAAAGC 143552 33 87.9 28 .............................ACCG CTACCAGGTGACCGCCACGGCCGGCGCA 143491 33 93.9 28 ...............................CC GGGCCCACGCCTCATCGAACGTCTCGCC 143430 33 93.9 28 ...............................CG GCTTGAGCTTGGTGCGGGCGGTGGTGTC 143369 33 90.9 28 .............................CC.C GGGACGAGACGGTGGACAGATTCACGCG 143308 33 97.0 28 ..............................G.. ACGGCGACATGCTCGGGTAGCTTGCGCT 143247 33 100.0 28 ................................. CCTTGTCCACGGCGGTGGCGAGCCGGCC 143186 33 81.8 28 .................A..........TCCAT CTAGGGGGCCTGACCCGTGGATGGAATC 143125 33 90.9 28 ..............................TCC TCGCCACGCTGCGCGGCACCCGGGAGCC 143064 33 84.8 28 ......G......................CGCC GCTTCGGAGAGATCGACATGGCCAGCAT 143003 33 87.9 0 ......A.......................CCG | ========== ====== ====== ====== ================================= ============================ ================== 48 33 91.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTAGA # Left flank : CCGCCAGCGAATCGCTCAGGCCGCCCCGCCCCCGGGCATCGCAGAACTGGAACGCGGACAGCTTCCCGATGTCGTGGAGCCCCGCACAGAGCGCGGTCAGAGCACGTGCCCGGTCCAGGGCATGAGGCACGTCGAAGCCCTCGGCGATGGCTAGCCTCTGATTGTCGGACAAGTAGTGGTCCCACAAGAACAAAACCACCGCTGCAGCATCTAAGAGGTGCCTCACCAGCGGATAAGCCGGCAGCTTCGGATCCAGCCCCCGGGACTTCCCCCACGCCGTCTCGTCAGGAGCCACTTCCGGCCGCTGCGTCATGCGTACTCCCCCACCATCCGTGCGCCCTGCCCCTTGCCATCGGAACCGTCAATTCCCTACTCCACCATGCGGCACTGACAACGGGCGGGCATACGGTCGGGTAGCTTTGCGGCATGCGCTTCGACTCCCGCCCGACAACGCTGGCAAAGCCATTGCAAAGCCCCTGCTAAGCCGCAGGTGGCGAAGG # Right flank : GCTCGTGTTCACCCGGAGATCGCCCCGTTACTCGTACCGGTACTTCAACGAGTCCGCCTCCGTCTGCTCGATGTCGGCGATCGTCAGCTCCGGCATCCGGAGCTGGGCCAGCGTCACCTCGGCCGAGGTCGGCTGGGCATCCGCAGGCAGCCACTGCTCCGGCTTCCAAGCCCCGCTGCGCAGCAACGACTTGGGGCAGTGCGGGTAGACCTCCTCGATCCCCAGCACCAGCGCGCTGGCCGGCGGCTTGCCCACGGCGGTCAGCTGCGCCAGTAGCTCCGGGCGGGTGGAGACGCAGGCCCGGCCATTCAGCCGCAGGGTGGTGGTTCGCCCGGGTATGACGAACAGGAGACCGGCCCGCCCGGTGGCGATGACGTTCTGCAGGGTGTCCAGTCGCTTGTTGCCGGTTGCGTCCGGTATCGCCACCGTTCGTGCGTCCAGCACGGAGACGAATCCGGCGGGGCCGCCGCGCGGCGAAACGTCGCAGTTGCCCTCGGCGT # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 155753-157981 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000001.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 155753 33 87.9 28 .............................CCGT ACCCCGGCAACGCCGTGGAGATCATCGG 155814 33 93.9 28 .............................T..C GCGAGCAGGAGGTCCGCGCGTTCGAGCG 155875 33 90.9 28 .............................CAA. CCCGTCCCCGATACCCGCGGGGACGGGC 155936 33 100.0 28 ................................. GTTCGGGCTTCTCCGACTTCATGGACTA 155997 33 90.9 28 .............................C.GA TCCTGCAGCATTTGTGGCGCACCAAGTA 156058 33 90.9 28 .............................CCA. GGTTGGTGATCAGGTTCTTCGCTGTGGT 156119 33 90.9 28 .............................TC.A TCTCGGTGGTCTCTGGTACCGGCCTGGT 156180 33 97.0 28 ..............................A.. CGGCCGACGCGTTCCGGAACGGCAAGCA 156241 33 93.9 28 .............................TC.. GCCGCCAGGAACCCCGCCGGACGCCACG 156302 33 100.0 28 ................................. TCGGGTCCGGCTTCGCGCGGCTCCGGCA 156363 33 93.9 28 ..............................CG. ACCGTGTACTCAGCGAAGCTGCCCCAGC 156424 33 90.9 26 .............................AC.A GGAAGGCGGCCGAGCCGACCAGGAGC CG [156453] 156485 33 90.9 28 .............................TGA. CTGCACCAGGCCCCGGGTGGTCGGCAGT 156546 33 93.9 28 ...............................GA AGTGATGGCTAGTTTTGTGCCTGCGTTC 156607 33 90.9 28 ..............................CAT ACGACGTGGCCGCCGTGAGCCCGGTGAC 156668 33 90.9 28 .............................CA.C ACATTGACGAGGCGACGGCGGCGGCGAG 156729 33 87.9 28 .............................TAAA CGGCCCGTAGTAGTCGCGTTCACGGCCG 156790 33 90.9 28 .............................TCG. TAGGTGGTCCCCTTTGTGTTACATAGAG 156851 33 90.9 28 ..............................CAC TGGAGAAGAGGCCGGCGGGGGTGCCCGT 156912 33 93.9 28 .............................T.G. CGCAGACAGTACCGCCGGCAGGTAAGAG 156973 33 90.9 28 .............................C.AT CCGCTGAACTTTCCTTCAAGGTGTCGGG 157034 33 93.9 28 .............................CA.. TGAAGCACCGGGGTCGAGTGCGCGGGTA 157095 33 93.9 28 ..............................C.C TTAACAAGGGCAAGGTTCCGCAGGGGCA 157156 33 93.9 28 .............................C..T TGGATCGTTCGGCGGCATCCTCTCCACC 157217 33 90.9 28 .............................TC.T GGCGGACATCCGGGCCGCTCTGCCCGAC 157278 33 93.9 27 .............................AG.. CGCGCCACGGCGTGGTCACGCATGGGG C [157307] 157339 33 87.9 28 .............................CCAC ACCCCGTACTTGGGCGACCACGGCTTGG 157400 33 93.9 28 ...............A................A CCGTGCCGCTGCCCCACCGGGCCCTCGC 157461 33 93.9 28 ..............................A.C CCGTGCCTCCCGAGCCGCCGAAGGACCC 157522 33 93.9 28 ..............................A.C CCGTGCCTCCCGAGCCGCCGAAGGACCC 157583 33 93.9 28 ...............................TC ACATCCGATGTGCTCCGCAGCACCGTGC 157644 33 97.0 28 ................................T ACATCAAGTGGGGCTGGGGCGACCCCCG 157705 33 87.9 28 .............................TGGA AGAAGGAGCGAGACAAGAGGCAGGAGCT 157766 33 90.9 28 .............................CAG. AGGACTCCCGCCTGCTGACGATCCTGCA 157827 33 90.9 28 .............................CC.A CGAGCCCTACGCCGAAGCCGCTAGGCGC 157888 33 93.9 28 .............................TC.. TCACCGTGTCCACGCTGAACGGCGCGGC 157949 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= ============================ ================== 37 33 92.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTCG # Left flank : CAGACCCTCCTCACCGAGGCGGGCGACGAGCCGGACAGCGAAGCTGACGCCCGCTCCGACCGCCGCGAAGTGGAGATGGTCCACCTCTGGGACCCGCGAGAGGGTGTCCTCCCGGCTGGTGTCAACTATGCACACGGGGGGCCGTGATCCCCCGTGCCGTCAATGCTCGTCATCGCCACCACCGCCGTCCCCGATCACTTGCGGGGCGCCCTCAGCCGATGGACCACGGAAGTCGTAGCCGGCATCTTCGTCGGCTCGGTCTCCGCGCGAGTCCGCGACGAACTCTGGGAGGCGGTGACCCAGGTCGTCGGTGACGGAGCAGCCGTCCTCGTCCATCCCGCTCCGGCAGAACAGGGTTACGGCATTCGTACGGCGGGGACCCGGCGCCGCGTGCCCGAGGATTTCGATGGGCTCACCTTGATGAGAATGACGGGAGTCTCACCCACTCCACCAGAGGTAAAGAACTCGCAAAGCCGTCCTTGAGTCGCAGGTCAAGAAGT # Right flank : GCGACGGCGGGTAGGCCAGGGGGATTCCGGTCAATCGCGGGTCCCCGCCGTGATGGGGCCTGGTGGGGTCGATCTCGGATTCCGTGCTACCCAGCCGCTGTCCCGGTGCAGAAGGACGGACGGACCGCGGTACCCGGTGCTGGGCCGGATTCCCGGAGCGCTGTTGGAGGACGAGGAGCCCGGCGGCCCCGTACACGGGCGTGGAACGCACGATGGCCCCGGCCGGGAAGGAGGGCCGGAGGTCCACCGCCTCCGCCCGTTCAGTACCGGGTGAGCAGGTCGTCGAGGACGCGCAGGCCGAAGGCGACCGAGGATTCGGGCACCCGTTCGTCGACGCCGTGGAAGAGTGCGGCGAAGTCGAGGTCCGGGGGGAGTTGCCGGGGGACGAATCCGTAGCCGGTGATGCCCGCCGAGGCGAACGACATGTTGTCGGTGCCGGCCGAGAGGCAGTAGGGGACGGTTCTCGCGCGGGGGTCGTGGCCGAGCAGGGCCTCTGCCAT # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 344-658 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000037.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 344 33 100.0 38 ................................. AACCGACGAACACCGCCGCCGCCCCAAACGCCTCTACC 415 33 97.0 35 ....T............................ AACCTTCGAGGGTACCAGCCATCAGAACGGCGTAC 483 33 100.0 40 ................................. TTCTTTCCGCCCCTCTTCTTCTTCCTCTTCGGGCGTGACG 556 33 97.0 37 ...................T............. AACCCCCAGGCCACCAGCGGGTTCTCCGTCGATGACA 626 33 90.9 0 G........G.................A..... | ========== ====== ====== ====== ================================= ======================================== ================== 5 33 97.0 38 ATTCCCGAACGGCCAGAGCCCGAAGGGCATAGA # Left flank : CCACCCTCCACACCTTCACCGCCCTCACCCGCTTCGCCGCCGTCGCCGGAATCGGCGCCCAGACCACCCACGCCCAGGGCTACGTCCGCATCACCCTCCACCACCACCCCCACCAACCACGACCACACCGACACCACAACAGCAACAAACACCGGACTGAGGCGTAACCACGAACCCCGCAACCAGCCTCAACAGACCGCTTCCTGCGCGACGCGTTTCCGCAGCTCACAGCAGGCGACGACATGTCACGTGAGCCACATCACCACGCAAAAATCCCCCGATGGCAAGATCCTGCGCAACGGACAGCATCACCGCAGGCCAACACGGGTAAGAAACAGCAAGCA # Right flank : AAACGGAAATGCAACTCCAGCGTGTACTGTTTCATCTCATTTCTGAACAGCTTGTGAGGCGGAGCCCGAAGGGTATAGAAACCCGCTGCCCGCGCGTGTCGTCACATCGGCCGACGCCGAATCAGCGGACCGACGGATCAGGATGCGAACCGGGCGGCCCAGGTGCGACAGCTCCGCGGCGAGCTTGGTGAACAGCGTCCAGAGCGGCCCACGCTTCACGTCACTCGTGCACCAGCGTGCTGAACTCGAAGGCCAAGCCGGGGGCACCTTCACCGCGGCCGGGTCGAGACCCGCCTCGATCGCCTCGCGCTCCGCCTTCGCCTTGAGCTTGCCGAAGCGGATCAGGACGCGCCCGAGGAGATCGGCGCCCTTAGCCTTCACCACCTCGAACCGGCGGACCCCGGCGAGACGGGCCTGCTCCTCGGCGAGGGCCTTCGTGCCGGCCCACTCGATGTCCCCCAGGTCCGCGTGGACGACGACCACCTTGTCCAGCATCCCGA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCGAACGGCCAGAGCCCGAAGGGCATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 653-1128 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000042.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 653 36 100.0 40 .................................... TGGTTCGGATTCTCGTCGTGCGAACCGTTGTCAGACACTC 729 36 100.0 38 .................................... GCCAGTACCTGCGAGAAGTTCGCGCCATCTCGGTAGGT 803 36 100.0 35 .................................... ACGCTGCGCACCTGATCGATCGGAGTGCGTCCCCG 874 36 100.0 37 .................................... ACGACCCATCCACGCGATGGGCTTCGGTGGGAGCAAC 947 36 100.0 38 .................................... GCCTCCTCCTCAGTTGCGAGGGACGAAGCTCAGGCCCC 1021 36 100.0 38 .................................... AAGGTCGGCCAGTCCCATCACTTCGGCTTGTCGGCGTC 1095 34 83.3 0 ........................T.--..C.G..T | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 97.6 38 GTTTCCGAACGGCGTCAGCCCGAAGGGCATAGAAAC # Left flank : TCAGCTCCGACGCCCCCGCGATCTCCCGCCGCTTCCCCGTCACGAACATGAACCGCGTAATGTTCCACGCCTCAAAAGACACCAGCCGGACCTGTACAGACACTGCTACCAGCCCCCTCGCCCTCCCCAGGCACCGCAGCCGCCGCGCGAGCGCACACAGACACCCGCCCCTACGAGCACCCCACCCGGGCCAGAAACCCTACGGCCTCCCACCTCCCCACCCCCCGGGAATCCCCAAACCACCCCAGCTGCGCACGTACCCCCACTACCCTCGCGCTCCAGCCCACGGGGGTCCGACGGCCCACCCCGGCGAAGCGCCCGTAACCGGCCTCACGAAAGCAGGGGCCAAACACGCCGTTCCTGCGCGCACCGTTTCCGCAGGTCACCGCCACCACTCAGGTCAAATGTGAGGTAGGTCACCATAGTCCAGGAGGTGTGGCACGCGATCCCGCGCAACGGGCATCATCGTCGCAGGTCAGCGACAGCGAGAATCGTGAAGG # Right flank : TCAGGTGGTGCTGACGTTTTATCCACAGTTTCCAGTTTGCGAGAGCATATAAATACCATTTGATTCACCGAAGCGCTTCATTCCATTCTGCCTTCGGAAAGGAACTCTCATGGGTGATCTTCTACACCGTGCAATTTCCGAGGCGTCTCTCCTTGCCGCCTGGCAGGAAGTCCAGGCGAACGACCTGGAGGACGGGAAGGTCAGCGACCAGGTGGCCGCGTACGCGCGGGGCGTCCTGGCCCGGCTCACGGATCTCGGGCGGGAGTTGAAGGCCGGGGCGTGGCGGCCGTCGCCTGTGTACGCGATGGAGATCGGCAAGCGGTCGGGCGGTACGCGTCTGCTTGCGGTGCCTGCGGTGGAGGACCGGATCGTGGAGCGGGCGGTGATGGAGGTGATCGACGAGTACGTCGACGCCGTACTCCTGCCCTGGAGCTACGCCTACCGCAAGGGGCTCAGTGTCAAGGACGCCCTGCACGACCTGACCGCCGCCCGGGACGAGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACGGCGTCAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 3632-3806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000042.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3632 36 100.0 31 .................................... TGAAGGCAATCACCATCCACGCCCCTGAGGC 3699 36 100.0 36 .................................... GGGAAGGTGCTGGCACCGCTCTTCTCGCTCGGGTCG 3771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 100.0 34 ATTTCCCAACAGCGCACGCCCGAAGGGCATAGAAAC # Left flank : CGTACCTGATCTGCTACGACATCCCCGACGACGACCGCCGCAGCGACATCTCCGACCTCCTCGCCGCCCACGGCGCCCGCGTCCAGTACAGCGTCTTCGAGGTCACCCTCCCCACCAAGAAGGACGTCCAGCGCCTGCGCGGCACACTCCGCCGCTACATGGACCGCGACGAAGACCAGATCCGCCTCTACCCCCTGCCCGCCCCCGTCCTCAACGAACTCGTCATCCTCGGCAACCGCCGCCTCGAAGAACGCGCCGACTACTGGATCCTGTAACCCATGAACACATCCCCCGACCCTCACCGTGCCCCTGACCAGCCCGTAACCGCCCTCCGCCCGCCACCGGCCAGAAGGCCACTTCCTGCGCGGCGCATCTGCCCAGGTCACAGCATGCGCGACCAAGACATATGGCGTGAGTCACCCCGCCGAGCGACCTCGCCGGCGCACTTCTGCGCAACGGACAGCATCACCGCAGGCCAGCGAGGGTAGGATCAGCCAAGC # Right flank : CCTCGCGGGCCGTCTCCGGTCGCGGCGTACGCGGCGGCCAGCGGGATCGGCCAGGCGCCCTGGTTCTGCACCATCAGCCGCAGCGGAGTACCGGCCCGCAGCACCTGCCAGACCGAGTCGTCCAGCCCGGCCCCGGCGGCCTTGAGCTGTTCCTCCCACGCCGCGTGCCGCGCGTCGTCGTCCAGCTTCACACCATCGGCCATCGCCGCCTCGCCCTGGACCATGCTGAGCAGCGCATTGACCATCCGCACCCGGTACGCGTCCTCGCCACCGAGCCGGACCACCTCCGCCGCCTGTTCCTTCGAAGAAGGCGGGACCATAAGCCTCCGCAGATCGGGCAAGCGGGCGATGGCGTAACGCACTGACTGGAACAGTCACTGCCTGTGTTCGCACATCAAAAGCATTCGGCAGGATCGAATATTGCCCACCGCCAGCAGCGGGCGACGGCCGAGCGGTGGGCGCCGCGGGAGTGGAGGCGCGGCCGGGACCTGGACGCCGAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCAACAGCGCACGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 243098-240021 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000007.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243097 29 100.0 32 ............................. GGCGGCAGCGTGTTCGGCCCGTTCTCCCGCTT 243036 29 100.0 32 ............................. GCAAGCACCGTCGCCAACGGCGGATATCCCAC 242975 29 100.0 32 ............................. TCCTCGCGCGCACGCTCCGACGCCTGCACTCT 242914 29 100.0 32 ............................. TGGGCGGCCGTCACCGGGGGTTCGGGAAGGCG 242853 29 100.0 32 ............................. TGCTCCAGGTTGATACCGCGCCAGTGGGTGTG 242792 29 100.0 32 ............................. GCTCGCGCTGCTTGGCGATGGCCTGCCAGTCG 242731 29 96.6 32 ............................G GCTACTCCGGCCGGTTCTTGCGGGGAGCGGCG 242670 29 100.0 32 ............................. ACATCCGGGGCGGTCTACGTTAGAGACGCAGA 242609 29 96.6 32 ............................G GACGCGAAGTTGGCGTTCTCCCTCGTGATCCG 242548 29 100.0 32 ............................. GCCGCCCACCTGCTGGGGATCCGCCCCTGGGA 242487 29 100.0 32 ............................. ACCTCGAACAGTCGGGCCAGGCCGAGGAACTT 242426 29 96.6 32 ............................T CTCGCGTTCGGCGCGGCGGTGTCGAAAGTGAC 242365 29 100.0 32 ............................. TTGGCCTTCAGCCACCCCTTCGGGCCCTCCTT 242304 29 96.6 32 ............................A CGCCGGCGCCCGCCGCGACGGACTCCGGGGAG 242243 29 100.0 32 ............................. CGGGCGGCGGTCACCGGGGGATCGGGAAGGCG 242182 29 100.0 32 ............................. CCAGACAACATCTGCAACGAGAACGCCAACTC 242121 29 100.0 32 ............................. ATCGTTAAACCCTTGGCAATCTCCCTCTCCCT 242060 29 100.0 32 ............................. CGCCCGCGGCGAAGATGTCGCGTAGCGCGCGG 241999 29 100.0 32 ............................. GGCGCGACCAGCGGCCCGGCCATGAACGAACC 241938 29 100.0 32 ............................. CTCCCTGGCCGCCGCCCGGGGGGGGTTACATG 241877 29 96.6 32 ............................T TGCCGCCGTCGCCGGGGGCCTGTGCTGCAGAT 241816 29 100.0 32 ............................. TCAGCGGAGAGCAGGCGTGACCCTCCGGCCCC 241755 29 100.0 32 ............................. TCAAGGTTGCGCGCCATGAGGGAAGCGGCGGT 241694 29 100.0 32 ............................. GGGCGCCCCGCCCCGCCCAACGTCCGGCCCAG 241633 29 100.0 32 ............................. GGGCGCCCCGCCCCGCCCAACGTCCGGCCCAG 241572 29 100.0 33 ............................. TACGGCCGACGACCGGTCGGCCCGCTCGCCCGC 241510 29 100.0 32 ............................. GACTCGCTCTGGTCCAGGACAGCCGAGCGGGT 241449 29 100.0 32 ............................. GATCTTGGGGTCGATTCAAGGGTTCGGGGCAA 241388 29 100.0 32 ............................. GTGAACTGCGACTCGCGGGGGAGGGATGCCTC 241327 29 100.0 32 ............................. GGGATCTTGCACATCACGTCGACGCTGTTCGA 241266 29 100.0 32 ............................. GACCTGCCGCAGGACTACGAGTGCGACCCGGG 241205 29 100.0 29 ............................. ACCGCCGCCGCCGCCGAAGCCCAGGTCAC 241147 29 100.0 32 ............................. TTGTCCAAAGTTGTGACATCGGGAGGCCTGCG 241086 29 100.0 32 ............................. GACCGCTCGGTACCGCCGGCGGACGCCCACCA 241025 29 100.0 32 ............................. CCGGCCGCGCTGACCGGCGTGGACGGCAGCGG 240964 29 100.0 32 ............................. GGCCGCAAGTCGGGTAGGGGTCGCGTGATGTT 240903 29 100.0 32 ............................. GGGCAGTCACAGCCTGACTTGATTACGGCGCT 240842 29 100.0 32 ............................. GTGGCGTCGTCGACGAGCGCGGGCCACTGACC 240781 29 100.0 32 ............................. CGGTACATCGCACCCCGGCTCGGAGCACGTGG 240720 29 100.0 32 ............................. CGCGCGATCTCCCCGAGCGAGAATCCGGCGTC 240659 29 100.0 32 ............................. GCCGACGGGAACGTCACCGACTGGCGCTACGT 240598 29 100.0 32 ............................. TCCACGGTCATGACCGGCATGACCTCGTCGTC 240537 29 100.0 32 ............................. GGAGCCTTCCTCTTCGCCGCGTCCACGGCGCA 240476 29 100.0 32 ............................. ATGCGGCCCTGGCCGGGCACCCCGAAGGAGGG 240415 29 100.0 32 ............................. CAGGGCGCGACGACCGTGCTCGACGGGTCCGG 240354 29 100.0 32 ............................. TGCCACGAGTCCACAGACGCATTCCACGTGTG 240293 29 100.0 32 ............................. ACGGCGTTGTTCGCGTGGCCGGGCACGTGGAT 240232 29 100.0 32 ............................. AGCAGTGCCCGGCGGCACAGGCTGTTGCCCTT 240171 29 100.0 32 ............................. GAGGACCAGGAGCACGCGCTGCCCGCCGTCGA 240110 29 100.0 32 ............................. AAGGCCAAGGCCACCGAGTACGTCAACACGCT 240049 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCGTCAACTACGGCGGAGGGGACGACTACGGAGAGTCGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGTCTGCGTGGCTTCCTGACACGCTGGCTGCTGGAGATCTCCGCGGGCGTGTTCGTGGGCAACCCCTCCGCCAGAATCCGCGACCTGCTCTGGGAAGAAGTCCGGCAGTTCGCGAACCAGGGCCGTGCCCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACTTTCCGCACCCACGACCACGCGTGGCACCCGACCGACCTCGAAGGAGCCACCCTTATCCGCCGCCCCGACCCGACCGCACCGCCCCTGGCGGCGACTCCCCGCAGCGAACCGCCATCGGGCTGGAGCAGGGCCGCCAAACGCCGCCGCTTCGGCAGGAGCTGACGCCATATTATGACCCACATGCCCGATTCGCCGGAAACTGCGAAAGTCCCCGGAAACCGCCCCCGCCGCCGCTAAACCCCCAGCTCAACCAGC # Right flank : AGCCCTGCCGGCTCCGTGCCCGCCCCGCTCCCGGGCTCCCCGGCTCCCGTGCCCGGAGGGCGCGTGTCAGCACTCGATGATGTTGACCGCCAGGCCGCCGCGCGCGGTCTCCTTGTACTTCACGGACATGTCCGCGCCGGTGTCCTTCATGGTCTTGATGACCTTGTCGAGGGAGACCTTGTGGCTGCCGTCGCCGCGCAGCGCCATCCGTGCGGCGGTGACGGCCTTCACCGCGGCCATGCCGTTGCGCTCGATGCACGGGATCTGGACGAGCCCGCCGACCGGGTCGCAGGTGAGGCCGAGGTTGTGCTCCATGCCGATCTCGGCGGCGTTCTCGACCTGTTCCGGGGAGCCGCCCATCACCTCGGCGAGCGCGCCCGCGGCCATCGAGCAGGCCGAGCCGACCTCGCCCTGGCAGCCGACCTCGGCGCCGGAGATGGAGGCGTTCTCCTTGAAGAGCATGCCGATCGCGCCGGCCGCGAGCAGGAAGCGGATCACTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 253002-256454 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGZL01000007.1 Streptomyces spongiicola strain 531S, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 253002 29 100.0 32 ............................. GGCGGCCGCCGCCACTGCCCCGAAACCCCTGA 253063 29 100.0 32 ............................. AAAGCGTTCCGGAGTCGGATTACACGTTGAGG 253124 29 100.0 32 ............................. CCCCACGGCTCCGCCGCGGGGGAGCCGGCACC 253185 29 100.0 32 ............................. GGGAAGCTCGTTCGCCATCTACCGGGCCGGGT 253246 29 100.0 32 ............................. AAGGCCGGATACCTGCGGGCCGTAAACCGGAT 253307 29 100.0 32 ............................. GGGCGATCTCCCGCTTGGCCCCGACCTCGCGC 253368 29 100.0 32 ............................. GAACGCGGTATCTGGCACCGGTCCGGGCCGCA 253429 29 100.0 32 ............................. GAACGCGGTATCTGGCACCGGTCCGGGCCGCA 253490 29 100.0 32 ............................. CACTCGCCGTCCTCGAGGGCGGCGCGCTCAAG 253551 29 96.6 32 ............................T CACGCGCGCCTCACGGGGAACAGACGGTGTGT 253612 29 100.0 32 ............................. TCGTCTTGCTTGAGCTTCGGCTTGAGAGCTAG 253673 29 100.0 32 ............................. GGCTTCCAGAAGGTCGCGGTCATCATCGCGGC 253734 29 100.0 32 ............................. TCAGCAATACGAACTGGATCGCGCGCTCAGAG 253795 29 100.0 32 ............................. CGCGACGGCACGGCGGAATTCGCCGACCTCAA 253856 29 100.0 32 ............................. CAGAAGGACGAGCCGCGGTAGACCCGGTTCGG 253917 29 100.0 32 ............................. TCGAATGCGGTCATGGCTTCTCCCTTTCGCTG 253978 29 100.0 32 ............................. CGGCGCCTCTTCTCTGCCTCCCGGTGGCTGGG 254039 29 100.0 32 ............................. ATTCCCGTCCGCGCCCGCCGCGGCGGGGAGTG 254100 29 100.0 32 ............................. TCGTACAGGCCGTGATCCTCGGTCCGATTGCC 254161 29 100.0 32 ............................. GCCATCGACGACGAAGAGGAAGCGGGAAAAGC 254222 29 100.0 32 ............................. GGATACGTCCGCATCCTGCAGCCGGACGGGAG 254283 29 96.6 32 ............................T CGCCAATACAAGACCGGCCATTCTTGGCAATC 254344 29 100.0 32 ............................. ACGGGCCCGGCCCCGGTCGAGACTCAGCCGTA 254405 29 100.0 32 ............................. CGTGGTGCTGTAGCCCATGAAGCCGAAGGTGG 254466 29 100.0 32 ............................. GACGTGGCCCCGGCCGGCCCGATCTTCATGGA 254527 29 100.0 32 ............................. CGGCCGGAGTCGAACGGGCCCAGCCAGCGCGT 254588 29 100.0 32 ............................. GAACGCTTCGATCTGCCCGTGGTACTTGGTCC 254649 29 100.0 32 ............................. GGCAAACCTCAGCGGGTGAACCTCGAGGACCA 254710 29 100.0 32 ............................. GAGACAATCCGCCTGATCGACCCCACCTGCGG 254771 29 100.0 32 ............................. TTCCCGTTGTTCGATTTCCGCACCCGGCATCT 254832 29 100.0 32 ............................. GACGTCGACCCCTCAGACGTCCCGCTCCGCGG 254893 29 100.0 32 ............................. TTCACGAGGCGGAGGTGGGCGGGTGCGCGGCC 254954 29 100.0 32 ............................. CTCCCTGGCCGCCGCCCGGGGGGGGTTACATG 255015 29 100.0 32 ............................. TACGCCGCTTTTCAGGAGTCCCTCGGCCACTC 255076 29 100.0 33 ............................. ACGGCACGGCCACCAGGCCGCCTGACCAGGGAA 255138 29 100.0 32 ............................. GTGCGCGCGTTCCAGCGCGCGCAGGGGTGGAA 255199 29 100.0 32 ............................. AAGGCGGGGAACCGCCCGCCTTCGCGGGACCG 255260 29 100.0 32 ............................. GCCCTGATGACGGAGCTGCGATCGGTCCCGTC 255321 29 100.0 32 ............................. TGTGTGCGCACGATCGGTGCTGAATGGTCACA 255382 29 96.6 32 ............................T CCGCACCCGTCACCGTACGGCGACCCGATGCT 255443 29 100.0 32 ............................. GGCGTTGGGGCCCCCTGTGTGTGGTCCACCGT 255504 29 100.0 32 ............................. GCCGGGCATATCGGCGGAATGCTTGCCCTTAC 255565 29 100.0 37 ............................. GCAAGGACTCCCCCGAGGGCGTCACCGGGTCCCTGCT 255631 29 93.1 32 .CC.......................... CCAGCCACTTTGTTTCCAGCACGGTGCCGCCC 255692 29 100.0 32 ............................. GGCGGGCCCCGGCCGCGTCGGTCTCGATGCTG 255753 29 100.0 32 ............................. CGGAACGACTGCGACAGAGTGAGCGTGGGGCA 255814 29 100.0 32 ............................. CACCCGCGCTGGCCCGTGGGCCTGTTGTTGGT 255875 29 100.0 33 ............................. GTGCCTCGGACGTGGTGAACGGGCGCCCCGTCA 255937 29 100.0 32 ............................. CGGTGACTGTCCGCTCGACAGGCGGATGCTCT 255998 29 100.0 32 ............................. CGCAGCCCCCGCAGGACGTTCAACGCCGACCG 256059 29 100.0 32 ............................. CAGTGCTCGCACCTGTTCCTGTACCGCACGAC 256120 29 96.6 32 .........................G... ACCCACGGTCACGAGTCGTCACGGGTCCTTCT 256181 29 100.0 32 ............................. TGGTCGCCATGGGTTGGACGATCGTCCTCGAC 256242 29 93.1 33 .........................GT.. CGTTTACCGGCCGCTTACGGCCGTGGTCAAGCA 256304 29 100.0 32 ............................. ACGGCCCCGGACCGGGGGTGAAGGCCCGGACT 256365 29 100.0 32 ............................. GTGTACGCCAGCACCGTCGTCGCCGCGGGCAA 256426 29 75.9 0 .....................CC.ACATG | ========== ====== ====== ====== ============================= ===================================== ================== 57 29 99.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGACAGGCGAACGCCGGGGTTGCCTTGCCGATGTCGTGCACAGCGGCCAGCCAACCGACGAGGGCCCGCGCGTCCGAATCACCGCGCGGCAACGCCTCGGCGACCAGCCCCCTCACGCCCGCGGGCAGCCACCGGTCCCACAACAGGCGAGCCACCTCGGCGCTGTCCTCCATGTGCCGCCACAGCGGCAACCAACCGTCGGTGTCGCGGTCATGCTTGGCCCACACCGACCGTGCCGGGTCCCCGAGCCGGGGCAGCATGCCGAGACGGGTACGCTCCCCGTTGCTCATGCAGAGATTGATACATGCACGGCCGGGCTCCGCGCACGGAAATGGGTAAACGCAGTCATCCAGGTGATATCGGCTGGTATACCGATCCTCTGACACCCGGTCTGCCAGGCCATCGGAACCGAAGGAATGCCCCGAATGACCTATCTGCCCGACTCCGCAGAAGTAGGCCGAACGGGGCCTGCGCTGCGGTGAACTACCAGGTCAACGAGT # Right flank : GCCCGGGCGCCTCATGCGCCCCGCGCGCCGAAGGGCGCGCCGGGCGCATGGGGCGCCTCGCTGTCAGTCCTGGTGCAGCGCGCCCCAGAACTCGTCGAAGGTCAGCAGGCCGTCGCCGTTGGCGTCCTTGGACTTGATGACCGCCTCCGCGACCGTCTCGGTCACGTGGAAGTCGCCCAGCTGCGCCATGGCGCTCTTGTACTCGGCGGCCGAGATCAGCCCGTCGCCGTTCAGGTCGAATCGATCGAAAGCCTTGCGTGCCGACTCGATGTCCGCCACAGCCCACCCCTTCTCGGTGCATTACTGACGCCGGCCAGGTTATCGGCGGAGGGGCGGTCCGGCCGGCGGGGGCCGCGGGGGTCGACGGCGCGGGCGGCGCGGACGGGGGTCTTCGGTAGTGCGCGGGGCGTCGGGGAGGATGGGTGTATGAGCGACGCGGTGGCACGGATACTGGAGGCGGCGGCACGGGACGAGTTCCCGCCGCCGGACGGTGGTACGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //