Array 1 241952-239044 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWIP01000003.1 Pseudoxanthomonas broegbernensis strain DSM 12573 NODE_3_length_333348_cov_75.8555, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 241951 28 100.0 32 ............................ AGTCATCGAGCGGCAGGTTGCACATGCGGAAG 241891 28 100.0 32 ............................ TTTCCAGGTAGCGGTCAGCAGTCCGCGGAACG 241831 28 100.0 32 ............................ TGGGGGAACAGGTACTTCGCCGGCGGCGTGCC 241771 28 100.0 32 ............................ TGCCAGCTCGCCTTCGCCGCGTCGCTGAGGGG 241711 28 100.0 32 ............................ TCACGTACTTGCTTCGGATCACGCGCGGGCGG 241651 28 100.0 32 ............................ TGACCACCGTCGGCATCGTCGTGAAGTTCGCC 241591 28 100.0 32 ............................ TCGCTGGGGCTCAGCCGGTTGGCCTTGATGAA 241531 28 100.0 32 ............................ ACCCCTCCTCGCCAGGGATGGCGACGCCTGCT 241471 28 100.0 32 ............................ GTCCACAACTCCGGCCTGTACGTGAACGCTGC 241411 28 100.0 33 ............................ TGGTCGAGCTGGAACGAGATGACGGTGAACTCG 241350 28 100.0 32 ............................ ATGTCGAATACGTTGGGGGCGGCGACCCCATC 241290 28 100.0 32 ............................ CATGACGATCGCCTGGGCCTCGGCGAGCCGGC 241230 28 100.0 32 ............................ GAGCTGCGCGACACCGCCGAGCGGGCCAAGAA 241170 28 100.0 32 ............................ TGCAGGCCGAAGCCGTCACAGACACCGTCGGC 241110 28 100.0 32 ............................ CTGATCCGGACGTGGGGTCCGAACTGGATGAC 241050 28 100.0 32 ............................ CATTCCTGGAACCAGTCGCGGATCACGCTGCC 240990 28 100.0 32 ............................ GGAACCGCTGGCCAGCGGAACCATGTGCGTCA 240930 28 100.0 32 ............................ ATCGGCGGGATTCCCGCCCGCACCGGCGATGT 240870 28 100.0 32 ............................ AACTCGCGCAGCCAGTTGGTCAGATCATCAAG 240810 28 100.0 32 ............................ AACGATGCACAGATCACGCGCGGCGACGATGG 240750 28 100.0 32 ............................ GTTCCTCGCTGCGGTAGGTCAGCGTCAACATC 240690 28 100.0 32 ............................ AGATGGTCCTCTTAACTGGATGCCTTCGTCTT 240630 28 100.0 32 ............................ GCGTATACGTGCCCATCCCGGCCGCGCTCACC 240570 28 100.0 32 ............................ ATGATCTTCGTCGTTATGCCTCCCGTTTGGCA 240510 28 100.0 32 ............................ CGAACCCATGCGCAGAAGCGCACTACGATCAC 240450 28 100.0 32 ............................ TCGTAACCGGCCAGCCCGGCCACGGCAAAACC 240390 28 100.0 32 ............................ TACACACTCCGGAGAATGCCGATCCTCACCCG 240330 28 100.0 32 ............................ ATGGGGAAGTGGTAAGCCATGCTGGTATTCAA 240270 28 100.0 32 ............................ TGCAGGTGACAAAGTGAGCGCCCTTGTCTGGA 240210 28 100.0 32 ............................ TCGATCAGTCTGGCCTGGGCGGCGGTGGCTCT 240150 28 100.0 32 ............................ AAATCCGGATTGATCCAAGCGGCCCACAGGAT 240090 28 100.0 32 ............................ ACTCCGCGCCATGGCCAAGGAAGGCAAGCTCA 240030 28 100.0 32 ............................ TGGAGCATGCCCAACTTGTCGCCCGTGAAATC 239970 28 100.0 32 ............................ TGGCAGCGTTCGAGATGCGGGATGCCGGCTAC 239910 28 100.0 32 ............................ AGTTCGTAATGATCGCTTCCTTACGCGCCTCC 239850 28 100.0 32 ............................ TGTTCGACGTTGAGCTTGAAGGGCAGCGGGTA 239790 28 100.0 32 ............................ ACCACTTCCCTACCCTGATACGCCGGAGCCGA 239730 28 100.0 32 ............................ AGCTAGCGAAGATCGCAGGCCTCGACCCGAAA 239670 28 100.0 32 ............................ TGCAGGCGCAGCAGGAGGCCGCCGCGCGGCTG 239610 28 100.0 32 ............................ CCCGCCGTCACCGTCGCTCCCGCTCCGTTGCC 239550 28 100.0 32 ............................ AGTCATAGCGCCGCACGCGAGCGCCCGTGGTC 239490 28 100.0 32 ............................ TGATCCGTCAAGTCTCCGAACTCCCCGCCGCT 239430 28 100.0 32 ............................ TATTCGAGGTGCGCTATGCCCCTGACTCCTTC 239370 28 100.0 32 ............................ TGTCAAACAAGCCTCCCTTGTCCACATGCAGG 239310 28 100.0 32 ............................ ACCGCGAACATCGAGGTGGATTACAGCCACGG 239250 28 100.0 32 ............................ ATCGAGCCAATGCAGGCCATCTCGCCAAGCTC 239190 28 100.0 32 ............................ ATGTCAGCAGCGTGGTGGTCAAGAAGGGTGGC 239130 28 96.4 32 .......A.................... GCAGATCGCCAGGGATGTCCGTCGCCTCAGGG 239070 27 92.9 0 ...A.................-...... | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.8 32 GTTCACTGCCGCATAGGCAGCTCAGAGA # Left flank : GCTGCGCGCGCTCACGGCCACGACCTGGCTCAACGGGATGCTTGACTACCTTAGGATCTCGGAGATTGAGCCAGCTCCCACTGGTACCCGCCATCGCCATGTAAGCCGCGTGCAGGCCAAAAGCAATCCTGCCCGTCTACGCCGTCGCGCCATGCGCCGGCATGGATTGGACGAGAAAACCGCAACCGACCTCATCCCTGACTCAGCTATAGAGCGTTTGCGACTGCCATTTGTGATGCTGGGAAGCCGTAGCACGGGACAACCATCATTTCCGCTTTTCATCCAACATGGCCCGCTACTCTCCACGGCCATCCCAGGAAAATTCAACAGCTACGGCCTGAGCCGGGAGGCAACCGTTCCCTGGTTCTAACCCTTTTCTTTTTCAATCTTTCGTCCTCATATAAATCAAAAACTTATCGGCCGCCCCTGGAAAAGGGGAGCGGCCGTCCTTTTTCTTAGCATCGATAGAATTTTATGGGTAGTTGCGGGATATTTTTCTA # Right flank : TGCGGGCAGCCCACCACCGCCATCTTGACCGCGTCGTTGCGTTTGCCTGAAGGTATGAACCTGCCTCCAGCAAATCGCCTACTCCCCGCCATGCCTCGCCTGCCTCGCCTCGCTCTGCCCCTGCTGCTGCTCCTTAGCGCCTGCGCCTCGGCGCGCACGCCGTGGGTGGAACTGGGCGGCGAACGCTACAAGGTCGAGATCGCCGCCGACGATGCGCAGCGCGCGCGTGGGCTGATGTTCCGCGACAAGCTGGAAGCCGGGCACGGCATGCTCTTCGTCCACGACCGCCTGGAACCGCAGGCGTATTGGATGAAGAACACCAAGATCCCGCTCGATATCCTCTACTTCGACGACGAGCGCCGGCTGGTGGCGCAGCAGCGCGACGTGCCCCCGTGCTCGGCCGGCGACCGCTGCCCGCCCTATCCCAGCCGGCGCCCGGCCCGCTACGTGCTGGAACTCAACGCCGGCGAAGCGGCCAGGCTTGGGTTGGAAGAAGGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //