Array 1 102786-100439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPL01000013.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 strain BCW_1517 NODE_13_length_156128_cov_3.94738, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102785 29 100.0 32 ............................. CTATATGATCGTTAGGTATTTTATTTAATATT 102724 29 100.0 32 ............................. ATGCAATAAATTACTTTGGCAGTAAGACCAAA 102663 29 100.0 32 ............................. CATCAGTTGGGAGGCGGCTTTCAGTTCCTGGG 102602 29 100.0 32 ............................. ATCCGAACGCAGACCCTGAGACGGATTTCACC 102541 29 100.0 32 ............................. TGGGCGCGGCTTAGCCTGGTATTCACTTCCAC 102480 29 100.0 32 ............................. AAAACGGTGGGACCATCTATGTACGCTAATGG 102419 29 100.0 32 ............................. TTTGCTGAGAGACTCCAGTTGCGTTTCTGGTG 102358 29 100.0 32 ............................. AAAAATATTTCAGAAGAAATTTCATTACCTAA 102297 29 100.0 32 ............................. GTGTGCCGGTACCGTCACCTGTGAGTCTGCCA 102236 29 100.0 32 ............................. ATACTCACCTTCACCTATGTACTGAGCAAGAA 102175 29 100.0 32 ............................. CTCCACCTCAGCAGGCCAGACGGTTTCCGGAA 102114 29 100.0 32 ............................. CGTCCTTAATGGCTGCCATCGTGTCAGGTACA 102053 29 100.0 32 ............................. GTTTCCGGAAAAGTGTGGATTCGACAGGCTGC 101992 29 100.0 32 ............................. GAACCGTAAACCCGGCATCACGGAGCGCAGTG 101931 29 100.0 32 ............................. AGATTTATCAACCTCTGCATAGGTTTCCAACA 101870 29 100.0 32 ............................. AATGCTCATCGATGTGGTGCCAGTCACTTAGA 101809 29 100.0 32 ............................. GCTGCCGGAGAAATAGGGGGCTGGCAGAATGT 101748 29 100.0 32 ............................. ACCGCGCCAGTCAGGGAAACGTTAAATTACCG 101687 29 100.0 32 ............................. ATACAACGATTAAACATCCAATTATGCGCTAT 101626 29 100.0 32 ............................. ACAAAGTTTTACCGCCAGCACATTATCGCCGT 101565 29 100.0 32 ............................. ATATCCGCTTCCATGTCGATTGCCAGTTGGAC 101504 29 100.0 32 ............................. AGGCATTCCGCATCCGTAGCATTGTTTCAGGT 101443 29 100.0 32 ............................. TAAATATGAGTTTCACCCCGCAACTGGAGGCT 101382 29 100.0 32 ............................. CTGATCCACGTCGCCCGCCGCGAGGCCGGGCT 101321 29 100.0 32 ............................. GGGTCGGCGTCTGTGAAATCCTGTGGAATACC 101260 29 100.0 32 ............................. AATTCCGCAACATGCAGGACCACTACAGCGAT 101199 29 100.0 32 ............................. GAGGTTCCAGTCGAAAAAGTTGTCAGCGACAT 101138 29 100.0 32 ............................. GACGAATGCCGCGACCGCCGCCGCGATTGCCA 101077 29 100.0 32 ............................. GCATTCCAAACCCTTTGGAGTCAGTATGGCGT 101016 29 100.0 32 ............................. AGGATATTGCTAGTCGTTTTGATGAGGCTGAC 100955 29 100.0 32 ............................. CCGCTCTCATTTTTTCCTGAATTTCAGCAGCA 100894 29 100.0 32 ............................. TTGGTGTACCTGCCCGAATTCAATCGCGCAAT 100833 29 100.0 32 ............................. GTGATGATTCAGGAAAACAAACTGCCTGTAGT 100772 29 100.0 32 ............................. GGTTGGTAACAGGTTGGGTTGCGTATTAGAAA 100711 29 100.0 32 ............................. TTGATATGACTTTATCTAGATCGCGATTCTGA 100650 29 100.0 32 ............................. GCTGGTTTTAACCCACTGCTAGTAAAACGATA 100589 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 100528 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 100467 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAGTAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120968-120085 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPL01000013.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 strain BCW_1517 NODE_13_length_156128_cov_3.94738, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120967 29 100.0 32 ............................. CCGGCCTATAACTTTGGCGGCCTGTCACTGGT 120906 29 100.0 32 ............................. ACCCGTATGGTCGGTGGTATCTGGCAATTGCG 120845 29 96.6 32 ............................A GCTTCAGAGCGGGCATTATGTCGCTGGTGTGG 120784 29 100.0 32 ............................. GGACGCTGGCATATACCAGCACCATGACATAG 120723 29 100.0 32 ............................. GCGGTGCGGCATGAGCAATACATTTTTTATCA 120662 29 100.0 32 ............................. GCGCGTACTTTCTCAACGTCTGCCCGGCTCAT 120601 29 100.0 32 ............................. CCGCCACGTTTGAAATCACTCAGGGCGGGAAA 120540 29 100.0 32 ............................. GCGCTGGGTCGTTTCCACCAGCTCAACGCTGA 120479 29 100.0 32 ............................. GTAACGTTGCCGTTCTCTACGATATTGACCTG 120418 29 100.0 32 ............................. CCGATTCACCAGTTCACGCTCTCGATCATGCA 120357 29 100.0 32 ............................. CTTTCCGGTAGAGCGGAATTGAGAATGCTTCA 120296 29 100.0 33 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGAATAGC 120234 29 100.0 32 ............................. AATGGCGGAAATAGACGCACGCGGACCCGGTA 120173 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 120112 28 86.2 0 ....C........C..........G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTCATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 189148-189969 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPL01000009.1 Salmonella enterica subsp. salamae serovar 58:l,z13,z28:z6 strain BCW_1517 NODE_9_length_190442_cov_3.78702, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189148 29 100.0 32 ............................. AGTTTAAAACGTGGGGGCCATTATTACGCGAA 189209 29 100.0 32 ............................. ACCAACATGACCAGAGAAAACGATCTGCTAAC 189270 29 100.0 32 ............................. TACGCAAATTTATAGCAACTCTTCCTGCCGAG 189331 29 100.0 32 ............................. CAGACAATGCACAGGCAAGCGACTAAGCCAAA 189392 29 100.0 32 ............................. GATGCTATCAGTATGCGGCCGGATTCGGCTGC 189453 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAATTATATAA 189514 29 100.0 32 ............................. GAATAACCGACTGGATTGTCGAGGCCGCCGAG 189575 29 100.0 32 ............................. AAGTGGAACAGCAAATTAACTTAGCTGCAGAA 189636 29 100.0 32 ............................. AAATCAACCCAGCGCTTTAATTTAGTTTATCC 189697 29 100.0 32 ............................. CGCGGCAGGAGGCAGGAGATCTTCAGCCAGGA 189758 29 100.0 32 ............................. TTACTTTGAAAAACGGTAAAACTTATGGCCTG 189819 29 100.0 32 ............................. CGGTCTGACGGGTGGGCGATACTGGTCAAGGG 189880 29 100.0 32 ............................. ATTTAAAAATTCAATATGAGGTTGAAAATTTT 189941 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCCCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : AGCCAATTGGTTGCAGAGTTACAGGCGCTATGGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATGGTGAAGGCGTGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCAGCAGCGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //