Array 1 130092-131496 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCX01000003.1 Alcaligenes faecalis strain APW500_S1 16_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130092 28 100.0 30 ............................ CTGGGCAGCCCTGCGCCCCAGGATCTGTTC 130150 28 100.0 32 ............................ ACGTTCACCACGTTTCACGACACGGCCTAGGG 130210 28 100.0 32 ............................ TGATCAAAATCAGTGCTGCTTTCATCCACAAA 130270 28 100.0 32 ............................ GACCCTCGGGTACATCGTACCGATAGGTCATC 130330 28 100.0 33 ............................ TCGAACGGCACGATACTGATCCATGCCTCTGGC 130391 28 100.0 32 ............................ TGTCGGAACTCCTGCAGGAACCGCTGGCGGAA 130451 28 100.0 32 ............................ AATGATGCCACCTACGGCAAGATCCTCACTGT 130511 28 100.0 32 ............................ TCAAGGCGGTCCAACATTACGCGGCCAGCAAT 130571 28 100.0 32 ............................ TCGGATCCTCTGAAGTGGAGCGGAGATCTTGT 130631 28 100.0 32 ............................ TTGGTAATCTCGATTTCTGCCGCAGACTGCTT 130691 28 100.0 32 ............................ GCAAGTGATAGGGGGTAATTGTGGCTACAGCT 130751 28 100.0 32 ............................ TGGGCAAGAACGTCCCCATGGGCATCAACTAC 130811 28 100.0 32 ............................ TACCAAGGAGTGGCAGCCGAGCTTAGGAGGGT 130871 28 100.0 32 ............................ GATCGCTGTTTATCCGCACGGTTAGAAGATCG 130931 28 100.0 32 ............................ TGCGTCTGTTTAATTGATAGCGCTGGACTTAC 130991 28 100.0 32 ............................ TCACCGCCTAGGGAGTCCGTCAGATCATTGAC 131051 28 100.0 32 ............................ GACACGGGCAATTCGAGTCAGTCCGTCCCATA 131111 28 100.0 32 ............................ AACGTCCCCGCCTCCCTGGCCCGTGCGATCTC 131171 28 100.0 32 ............................ CAGGCGGGGGATCTTCGATTGCTGTTTATGCA 131231 28 100.0 32 ............................ CGATTGGGACGCGAAGTTCGCCCTCCATTGGT 131291 28 96.4 32 ............A............... ATGCTGGGACGTTGTGGGCGGTTGTCCACCCG 131351 28 75.0 32 ......C..T.AA....TG.T....... CGCTGACCGTTCGATGGGGGGCTGATTCAAAT 131411 27 78.6 31 ....-....T.CC..A.......G.... AGCTTGTGAGTCTCTATCATGCACATGCAAA 131469 28 67.9 0 ........TTT.A.GA..C...G.A... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 96.6 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGCTTAAATCGGGATTACGCAGGGCGGCTTGTACATCACAGTGTCGGTGAACCAGCCACGCCCCACCACAGAAATCCGCATCCCACACCACAGGCGGCCCCTGCCGAAGGCCTGCATAAGCCGCATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAGTTCTTTCTGGGTGTTTTGAGTGAATTAGAAGTTTATTTGCGGTTTATGGGGGAAATTGCTTGATCCTGTGTGACTATTTTTTACAATAAATTTGATTAGTGCATTCGGGATGATTGCCTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAAATCAGATGCTTATGAAATGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAACCTGCTTGGCCTTCAGGGATAGACGCTCTA # Right flank : AACGTTTAATTTCAGCTGTTTAGTCAGGTTTTTGTAATTGGCTATCGCCTGTCCAGTTGCTAGACCGCTGCTGGTAGCGTCCCTGTCGCATATGCAGGTTAGGGCTTACAGCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCGGGAAGTCCTTCATTAGCCAGCTTTTCCGCTTTACGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCCAGCAGACCGATCACCAGTCCCCAGAAAGCCCCGCCAATCCCGAACAGCGTGATATTGGCTGCCGAAGCCAGGAAGGTAATCAAGGCTGCTTCCCGTGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCAGCCAGCGTGACCCCAAAGACCCCAACCAGAATGTAGAACACACCGGCGGCAATCCCGGCGACCCAGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 146778-147588 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHCX01000003.1 Alcaligenes faecalis strain APW500_S1 16_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 146778 28 100.0 32 ............................ TACCGCGAACTGAAAGCCATACAAGAAGGCAA 146838 28 100.0 32 ............................ TGCAAGAACAACTGGTAAGTATTGACCAGGTA 146898 28 100.0 32 ............................ TTATCTAGGTGCCACGGCCACCGGCCAGAAAT 146958 28 100.0 32 ............................ GCCGGCAGAAACGGCGCTGCAAATTTACCAAA 147018 28 100.0 34 ............................ CAACCTCGCCGGTAGCAGGGTTGCAGGGGGAAAA 147080 28 100.0 32 ............................ TTATACGGCACCCCTTAGACAGTGAATCCTGC 147140 28 100.0 32 ............................ TGGAGGCCACTCAGAAGGACGTAGGCCGCTTT 147200 28 100.0 32 ............................ TGGCGGGACCGGCGTCTAGAGTCGGTGAAACC 147260 28 100.0 32 ............................ TACCCTCTATAAAAACCAAGGGGAACGAGTCT 147320 28 100.0 32 ............................ AACTCGCGCCGACGAGGGGCTGTCAACGCATC 147380 28 100.0 32 ............................ ATACCACTGGATCGTGTCTTTAACCTGTGTTG 147440 28 100.0 33 ............................ CTCTTTGCCTTGCCATTGACGAAGAACGACGGG 147501 28 100.0 32 ............................ GTTATTGAAATGACCGTGAGTGCGTGTTCGGC 147561 28 78.6 0 ...........AG....T...C...GC. | ========== ====== ====== ====== ============================ ================================== ================== 14 28 98.5 32 GTTTGCTGCCGCATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGAGTCTGGAGCAAACGCAGTGGTTACGTGGGATGCGTGATCATATAGAGCTCAAGGACGTGTGCCCTGTGCCGCAAGAAGTGAAATACCGAACCGTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGGGAAACAGCGGAGCAAGCTGCGGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGATTTGCCTTTTATACAGTTGCGTAGCCAAAGCACCGCACAAGCATTTTGTCTTTTCCTGGAAATGGGACCGGAGCATGGAGCTCCTGCGGCCGGGGGGTTTAATGCTTATGGGCTAAGTTCAGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTATTGAAAATAATTATCCTTAAAAATCAATTATTTAGGGTTTTTTCTAAAAAAAGGGTTTTAGAGGTGAAAAAGCTGGAAAGCGCTGAGGATTAAGCGCTTTCAGCGTTTTGACTCTA # Right flank : ATATTTTCACATCGTTAAGTGCCTGTTATTTTTAACATTAGCCGTTCGTTATCAATCAATAACAGAATTTATTCTCATTTATTCGCCTGTACTGATCTGCTGGTCCTTTAGTGGCTGACCCATGTTTCCACTCCAGGGTAAACAGGATTCCTTGTTTATCTCCTCCCCCTTTCAGCCCCTCTCCAAACAAGCTTCTTTACCCTGTTTCTTGAAGCCCCTCAGGCTCATCGCCATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCGGAAAAAGGACCTCTTGCCCTGTCCGCTTGATTGCACTGTTCAGGTGTGAACCCAGGCTGTCTGTCAGGCAGCCTGAAGTCAGTTTCGGTGCAAGCAAGTCTCTGCCTTCTTGACCACTATTACTTTTTTGATCACCTGCCACGCACGATACGGCGGGTGTAGATCTACGGTTTTAACGGGATTATTTATGAAGTCCAAAGCAGTAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //