Array 1 108170-106693 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUP01000007.1 Salmonella enterica strain BCW_3064 NODE_7_length_224334_cov_3.70575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108169 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108108 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108047 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107986 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107924 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107863 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107802 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107741 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107680 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107619 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107558 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107497 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107436 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107375 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107314 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107253 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107191 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107088 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107027 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106966 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106905 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106844 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106783 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106722 29 96.6 0 A............................ | A [106695] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126283-124302 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUP01000007.1 Salmonella enterica strain BCW_3064 NODE_7_length_224334_cov_3.70575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126282 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 126221 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 126160 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 126099 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 126038 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125977 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125916 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125855 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125794 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125733 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125672 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125611 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125550 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125489 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125428 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125367 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125306 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125245 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125184 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125123 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125062 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125001 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124940 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124879 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124817 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124756 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124695 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124634 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124573 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124512 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124451 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124390 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124329 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //