Array 1 31150-29662 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBO01000004.1 Neisseria dentiae strain DSM 19151 NODE_4_length_102445_cov_16.3313_ID_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31149 36 91.7 30 .CC.....C........................... GCAAGGACACAGCTGCCTTGCATAGCAGGT 31083 36 100.0 30 .................................... CGAGGGCAAGGGCAATCTGCCGCTGAGTAA 31017 36 100.0 30 .................................... AACAAGGGCTGGCTGCACCCCAACGGCCAC 30951 36 100.0 30 .................................... CTGCCACTCGGCCAAATCGTTGCGTTGGCC 30885 36 100.0 30 .................................... TTTTATCCACGTTGTAAATATCAAGCTGGC 30819 36 100.0 30 .................................... GACGGCAGCAGTTGCCATCTGGCGTATGGT 30753 36 100.0 30 .................................... TCCTTTCATTGGTTTGCGGCTGCGTCCAGC 30687 36 100.0 30 .................................... GTTTTGTTCGGCGGCTCGCAAGCGTTTCAA 30621 36 100.0 30 .................................... TCGTATAGTGCCAATACGCGCTTCAATCTG 30555 36 100.0 30 .................................... TACTACTACTACCGCTACTACTACTACTAC 30489 36 100.0 30 .................................... TTTTTTGGTTTCCATGCTGATGCCTTTCGG 30423 36 100.0 30 .................................... CATCTTTTTCCGGGTGGCTGATGGTTATCA 30357 36 100.0 30 .................................... CCAGAATTTTCAGGGTGGCGCCGGTCATGC 30291 36 100.0 30 .................................... CTGCGTGATATGCCATTGCGCTCGATTACG 30225 36 100.0 30 .................................... CGATATGTTTACCGACCCCGCAGACGTGGA 30159 36 100.0 30 .................................... TACCTGCTTTCAACCCAGCCTTTATCGGTC 30093 36 100.0 30 .................................... CAGATGACGCTATGATATGCGGCGTGGTGA 30027 36 100.0 30 .................................... TTCGGGTTCGGGCGTTACGGTGTAATAGGC 29961 36 100.0 30 .................................... TTTGCGTATTTTTCAGGCTGTTTCGTGCGA 29895 36 100.0 30 .................................... CCGCCGATACGGTAGATAACTTAACCGCTA 29829 36 100.0 30 .................................... TATTACCGCTACTCCTGCTACTGCTGCTAC 29763 36 100.0 30 .................................... GCCGTTTTTAACGTAGTCTTTGCACATTTC 29697 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCCGGCGGGCGGGCGCTGGGCAGCGCCGAACAGTTCAATGCCCTCCTTATGCCGTTGGCCGATATTTTCGGCGCTGCTATCGGTGCATCCCGCGCCGCCGTCGATGCCGAATATGCCCCGAACGACGCCCAAGTGGGCCAAACCGGCAAAGTGGTCGCCCCGCAACTCTATTTTGCCATCGGTATTTCCGGCGCCATCCAGCACACCGCCGGCATGCAGGACAGCAAAGTAATCGTAGCGATAAACAAAGACCCGGATGCTCCTATTTTCAGCGTGTCCGATTACGGTATTGTCGGCGACCTGTTCGACATCGTGCCGCAATTAACCACAGCCCTAAAAAGTTGAACGTTTCACGTGAAACAATATATTCCAGATGTTATTGTAAAAGCCGAGCATCAGTTGTTAATAGATGCTCGGCTTTTATTGAAATCAAGTTGGTATACAAAATTTTCATCTGGTAGTGCTGCAACTATGAGTTTCAGATGGCGCAACAGCGACTG # Right flank : ACTCAAGCCTGAAATCCTTATTTGATAAGGATTTCAGGCTTTTTTATCGTTTTTAAAACCACGCTAAAATAGTAATAATTGGTCGGCATTGACCTTTTTTTCACGGGGTTTGGGCTCGCCAATCAGCATAATCATGCCTGCAAATTGCTTTTCAGTTACCTCTAAATAGCGTACTTGGCCTTCTTCGGGTAGGTGTGCTTTCAATCGATTGTGGTGTTTCTGCAACGCATCACGGCCGCGTACGATGCGGGAGTAAACGGATAATTGCAGCATTTGATAACCGTCTTTTTGCAGAAATTGACGGAATTGGTTGGCGGCTTTGCGTTTTTCCGCAGTGGTTACAGGTAGGTCGAAAAATACGATTAAGCGCATAAATTTGGCCTCACTCATAATCTTGTACCTTTAAAGGAAGCATCTCGGGGAGTTTCAAGTTTTTTGAGTTGCCGGTTAGGGCTGCCTGAAAAGATTGAACGGTACGATCGATTGCTGCCAAGAGAGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 147088-147476 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTBO01000001.1 Neisseria dentiae strain DSM 19151 NODE_1_length_259878_cov_19.6404_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 147088 36 100.0 35 .................................... GTTACGAATAGTCAGTAATTGTTCAACTTGCTGCA 147159 36 100.0 35 .................................... GTTCTGCCTGCAAAGACAATTCTTCGAGAATTTCT 147230 36 100.0 36 .................................... CCTTTGGCCACTTCCAGCATATCGTTGACGGTCTGT 147302 36 100.0 33 .................................... CTTTTTTGCCTTTGTTTTTACTGCGCTTTTTTC 147371 36 100.0 34 .................................... CTGATGTAGTTCGGTCGGGTGAGCAGCGCCCATT 147441 36 88.9 0 T................................GTT | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 35 GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Left flank : TGCCCAAGAGCTATCCCGAAGCCTGCACCCTGCATATCCGCACCCCGCTCAGGCTGCAAAGCCAAGGCAGCGTGCTGGGCATCCACCGCATACAGGCAGGCATACTGCTGCGCCAACTGATGCGCCGCACCTCGGCTATCGCCACCCGCCATTGGGAAGCCCCCATCGAAGCCGATTTCGGCAAACTGGCCGCCGCCGCCGACCGCATACCCAACCATGCCAAGCTGCAATGGCAGGATTGGACGCGCTATTCCAACCGCCAGCAGCAGAAAATGACCTTGGGCGGCATTACCGGCACTTGGCGGTTCGACCATTTGCCTTTATCATTTGCCCAATTGCTGCATATCGGCCAATGGCTGCATATCGGCAAAGAAACCGTATTCGGCTTAGGCCGTTACACGTTGGCAGAGGTTAAATAATGATTAGCTTTGTAAAGAAGAGATTTGTTGGAAAACCCCTTTTCAACCGATTGATTTTGAAAGTGAAAGTTGCTGTCTGCT # Right flank : TTTTCAAACAGGTGTTACTGTGTGTCTGAAATCTTTGCAAACATACTTTAAGGCCGAGACCTTTGCAAAATTCAAATTGCTATCTAAAAAATCTGAACTCCGTCATTCCCGCGTAGGCGGGAATCCAGACGCTTGGCATCTAAGTATTTGTTTAATCAATGCTTCAATATTTCCATCTGGATTCCCGCCTACGCGGGAATGACGGGATTTAAGCATTTCAGACGGCCTTAAGGTATTTTTGCAAAGGTCTCAGGCCGTCTGAAATGCTCCTTCGTTTGCCCGGGCTTGAGCCGGGCATCTTGTTGCTTTGAAAGAAATAGAGCTACCCGGGTCAAGCCCGGGTATGATGATGGCCGGGGGTGTTTCAGACGGCCTTCGGGTGTTTTGCATAGGTTTCAAGCTGATTAACGATGGCTTAAAATTCAAGGGGAATCGAAGATGGCGAAAAGGCATCTTTATCTGTTTGCCTACGATATTGCCGACATCCGCACGCAAAACCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //