Array 1 53378-50178 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYS01000029.1 Amylolactobacillus amylophilus DSM 20533 = JCM 1125 strain DSM 20533 NODE_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53377 28 100.0 33 ............................ TATTGCAAAGACCGCTACTGAAGCGCGGCCGGT 53316 28 100.0 33 ............................ TGTTGTAAAAGCTAACGCCGTTAATAGGTTAGA 53255 28 100.0 33 ............................ CGGCGCCGGCTACTATGTATACTTTGAACCGTT 53194 28 100.0 33 ............................ CGGTAGACCAAGTTATTATTTTGGTGAAAAAGG 53133 28 100.0 33 ............................ CGCGGTAGGCCGTGCTAGGTATGACAACGGCGC 53072 28 100.0 33 ............................ TCTCATAGTGCCCGTTTTTCTTATATATTGCTT 53011 28 100.0 33 ............................ TCTCCACCACTCGCTTAAACTTCGTCTCATCAC 52950 28 100.0 33 ............................ CACTAAAAGCAGTCCCGGTACCATAAGATATTG 52889 28 100.0 33 ............................ TTGTATTATATAAATATAGAAGAGAGCAGGAGA 52828 28 100.0 33 ............................ CCATTCCTCCAAAACGAAAAATGGTCGGAGTTC 52767 28 100.0 33 ............................ TACATGGTTTTCACAAACTCATACATTGTTCTC 52706 28 100.0 33 ............................ TATGTTACGCCATCATCAATATCATCAGGGAAC 52645 28 100.0 33 ............................ TAGTAAGGGCATCGTCAGAGCTCGCAAAGATGG 52584 28 100.0 33 ............................ TCTTTTTAGCCAATTGCACTTGCGTAATGCGTT 52523 28 100.0 33 ............................ TCAACATTAACCTTAATCTTTGTCATTTAAAGC 52462 28 100.0 33 ............................ CACTCAGGAGTACCTAATAAAACAGATTAGTCC 52401 28 100.0 33 ............................ TTATCCACGGGCGTTGCGTTGTCATCAGGATTA 52340 28 100.0 33 ............................ CAGGCTTGTTATTTAAGGGGGTTGGTTGGCTAT 52279 28 100.0 33 ............................ TACTGATTTGTCTTGTGGCGTTATCAGCGTTGC 52218 28 100.0 33 ............................ TTTATCAAAGAGGTACCCACAAAGAGAGGATGA 52157 28 100.0 33 ............................ TTAAAAAGGCAAACCTCAATCTGGAGGTTAAAA 52096 28 100.0 33 ............................ TAATTTCTGTCAAACAATTTATATTAGTTGTTG 52035 28 100.0 33 ............................ TTCATGAGGGTGTAGACCGTTCGACAGTCAATG 51974 28 100.0 33 ............................ TCATTTCATCTTGGCAGGCTCTGCAGGCTTGAT 51913 28 100.0 33 ............................ TTGTCTTCCCCCCTTGGCGTAATTTTGAAGTTT 51852 28 100.0 33 ............................ TGCCGCATCGACATCTACCTTGTTTTGCGTAAT 51791 28 100.0 33 ............................ CACTAGTGGTTCTTGTAATGGTAGCTTGACCGA 51730 28 100.0 33 ............................ TAAATAATTTCCTCTACTCTATCAGACGTCTGT 51669 28 100.0 33 ............................ CCATCGCTTCCTATTATACTTTTAACACCATCG 51608 28 100.0 33 ............................ TGATACATTGAACCCGTCTGATTTAATGAAACA 51547 28 100.0 33 ............................ CATGGTCGTTTTAACGGCGGACGCCGTTATCGA 51486 28 100.0 33 ............................ TAATTCCTTTAAATCGTTATAGCCCGTGTAGTC 51425 28 100.0 33 ............................ TTGCTAATCCATGGCATATCAATACCGACAATT 51364 28 100.0 33 ............................ CTAGTATCTAAACCATAGTAGTTTAGTGTTTTC 51303 28 100.0 33 ............................ TAGATATTGTAAGAGAGATAGAGAGAGGGAGAA 51242 28 100.0 33 ............................ CGTAGCTTAAAACCTGCTGAATAGTGCCAGACC 51181 28 100.0 33 ............................ TCAAGTTAAAAGCTGATGGTTCAAAGGTGGATA 51120 28 100.0 33 ............................ TCCGCGCAATGATTTAACAGGTGCAGAGGTTAA 51059 28 100.0 33 ............................ TCATACGGGCCGGCGTGTGTGTAGTCGCGCGGG 50998 28 100.0 33 ............................ TCATGATAATTCAAAAGTTTTTGAAATGTTTAC 50937 28 100.0 33 ............................ CTCCAACTAAAAATTGGATTATCGGAGTTAAAA 50876 28 100.0 33 ............................ TCAGGGGTCTAGCAGCAAAGCCACGGCTCAGTA 50815 28 100.0 33 ............................ TCGCCAGAGCATTTCTAATTTTCGTGTTGGCAG 50754 28 100.0 33 ............................ CAGCAAGCAAGGCTATTATCGACTATGCGTTTA 50693 28 100.0 33 ............................ TTACAACCGCTTTTACGGCATTTATGCATAATC 50632 28 100.0 33 ............................ TAAGTGTTCGATAAATTTACCTAGATTTTCAAA 50571 28 100.0 33 ............................ TTGTGCTAGGCTGGTTGCAGATATTTGTAAGCG 50510 28 100.0 33 ............................ TACCGCCCACTTGATGATGTGATATGCCTTGTC 50449 28 100.0 33 ............................ TCCACTCAACACCACCAATTCTGCCTTGCACGA 50388 28 100.0 33 ............................ TATTCATTATCTTGCCATGTGTAATATGCATCA 50327 28 100.0 33 ............................ TAGCACAGTATAAATAATTAGGAGGTCATTCAA 50266 28 89.3 33 .........................CTG ATCAAGTTGAGTGATAAATTTGCGGTTTTCAAT 50205 28 96.4 0 ..........T................. | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.7 33 GTTTTCCCCGCACAGGCGGGGGTGATCC # Left flank : TGATACTGATAAGATTATTGCTATTGGTATGGTCAAGATTAATCACGGTGTTGCTGACAATCCAAAACAAATTCTAATTAAAATTGACGAGCCACTCTCAGATGAAATAATTAAATTAACTGGATATACAAACAAATGGTTGGAGACTGAAGGAGTTGATATTGTTAGCGCATTAAGTAGATTTGTAGATACTGTTGAAAATTTACCAATTATCGGATTCAATGTAAACTTCGATATCAATTTTATCAACAAAAATTTGATTGAAAATGGTATGTTGAAAGTAGAAAATGAAATTACTGATTTGAGAACAGTGGTGAAGAAAAATGAACTGTTTTTGAATAATTATCGGTTAGAGACAGTTCTGGCAAAATATGGTATTGAAAATATTAACCCACATCATGCGGAATCAGATGCGCTGGCAACGGCAAAGCTTGCGGATCAACTCATAAAAAATAGTTTACTATATTTTTAGAATGTTGATTTATAAGGGATCTTTTAGT # Right flank : TTGGTGCCGGAATATTTCAAATCTGATTTTTTAGTTCCCTGTATATACGGGGTGATTCATACACCGATAGCTTATATCAGTCAGCAATTACAACTTATGAACGTTCTAAGCATGAAGTTCAGTCCTGGCAAGTTTAATTAGTCAAAGAAATATTTGCGATTATACTTTAATATACAGTCATTATGCATATTAGGGTATTTGTTCTCACTAGGAAATGTGTATTAATGCTATAATACTAGGGTGGTTTTCCCCGCATACGCGGGTGTGATCCTGTTATGTTTGCTAATTTAATACATATCCAGGTTGTATTCCCCGCATTTGCGGGTTTTTTTGTTTTCCCACTAATCCAACACTTCCCCCAATTCCAACGACCAAACAAAAAAACACTAATCTAACCGATTAGTGCCCCAAAGTCCTCAAAATATTTAGCAAGGTGAAAATTTTAACAACGTGACGTTAAGCCGCTTTCGTCGCTGACACAAGAAGCATCATTGGTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //