Array 1 27293-29276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010818.1 Corynebacterium ulcerans strain 131001 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27293 29 100.0 32 ............................. GTTCTGGACAACTCTCTTCTTTGTCTTTATAG 27354 29 100.0 32 ............................. TCTCCGCATCACGAAGATTGTGATTAGCCTTC 27415 29 100.0 32 ............................. TTGAGTGCTGCGCGGAAGTTTCTGTCCACAAG 27476 29 100.0 32 ............................. GCTTATCAGCCACACGCATACCAACAAGGGCT 27537 29 100.0 33 ............................. CGTGGGCCAAACACAAGGCCTGATTGATAAAGG 27599 29 100.0 32 ............................. TGGAACCACCCAAATCTGCGGCCAAAACAATC 27660 29 100.0 32 ............................. CGCCCCTACCGGCGCGACCCGCAAGGACGCCG 27721 29 100.0 32 ............................. GGAAACCGCCCGTGGCGTTTAATGAGGAGCCC 27782 29 100.0 32 ............................. GCTCCCTCCGGCGATCAAGATCAATGCGAACA 27843 29 100.0 32 ............................. CCGTAAATGACAATCGGGTAGGTGATGAAGAG 27904 29 100.0 32 ............................. TTAATGTAGGCGGAGTGGTGCCAGAGTGGAAT 27965 29 100.0 33 ............................. CCCACCCACCGCGATTAAGCCACGTGGTGGGAT 28027 29 100.0 32 ............................. ATGAAGACGCCGTGGAGTACCCAGAAAACACG 28088 29 100.0 32 ............................. CGTCACCGACTCCGCATTATTCGCCGCAGCCT 28149 29 100.0 32 ............................. GCGCAATTTTCCGGGGCCTGATAAATCAAATT 28210 29 96.6 32 A............................ CGGCTGCCACTTTTCGAGCTGCTCCGCATTGG 28271 29 100.0 32 ............................. CGTGAGATTCTTCTACGGGGGCGCCCATGTTC 28332 29 100.0 33 ............................. CGCCTCAATTTCTTCAGGGGCGAGCTTGATCCG 28394 29 100.0 32 ............................. TAGGCCCCAACGCCTTGCGAAGCGCGCTAGGG 28455 29 100.0 32 ............................. CCAATCATGGCACGTGACCAGCGCTTCTACGG 28516 29 100.0 32 ............................. CAATTGATCCAATGTGTCCTCGATGCTCATTG 28577 29 100.0 32 ............................. ATCTTAGGGCGGGGTGCTCTAAAATAAAAAAT 28638 29 100.0 32 ............................. TTAAGATTCGATCACAATTTCTAACCACATGC 28699 29 100.0 32 ............................. GGCTTTGGCAGGCAAAGCGCCGGTTTCGCATC 28760 29 100.0 32 ............................. GAGACAGGGGAACTGGAAGACATTGCTGACCT 28821 29 100.0 32 ............................. AAGCATGGAAAATGACGGCCGCATTGCGGTGT 28882 29 100.0 32 ............................. TCACCATCAACCCAACCCCCAGCCTGTGAGTC 28943 29 100.0 32 ............................. TCGGGAAGCTCTTTCACCGTGGCGATGATGTT 29004 29 100.0 32 ............................. TAACCTCACGGGCTTCTTCCAAATTCTTCTGC 29065 29 100.0 32 ............................. GCCAAAAACCCGGTAAAACCACTCAAATCTGC 29126 29 100.0 32 ............................. GGTAGGGAATTCACCCTGAAAGAAGAAGATAG 29187 29 100.0 32 ............................. CGGGCAAAAACATGAGCTCCGAAAGCATATCT 29248 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTAGGAATTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGTCTTTTCTTTTGCCCATTTCCCGTCAGTTGTTAAAGAAGCTCGTCCGCGGATTTCACAACACCATGATTGACCAGCGTTTTTATCGCCGCAAAAACTTCGTTGATCTTGGTAGTCTCCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAATCTTCGTAGTGGAAGGCTCAATAAAAGCATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAAACTGCGCGTTTACTCACTCTCCGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAAGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACAGCTCTGGATAGAACTCCTACATAAAGGCCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGCCCTTGGATGACCGCAAACATTTATTTACCACCGTATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGACGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 104291-104020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010818.1 Corynebacterium ulcerans strain 131001 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 104290 37 100.0 51 ..................................... TTATTACTGGCTGTGGTGTCATCAGAACCCACAAACTTTTCAAAGGCAAAA 104202 37 100.0 36 ..................................... TTATTACTGGCTGTAGTGGCGATGATACCCAGACCT 104129 37 97.3 36 ..............G...................... CCGGCTGCTTCGCGAATGTGGCGGTTCAGTTCTTTG 104056 37 91.9 0 ..............G................C....A | ========== ====== ====== ====== ===================================== =================================================== ================== 4 37 97.3 41 GTCGCTGCGGCTTCAGTCGCAGCCTTTCATTGAGGTT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAGCAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGTAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAACCTCTCGGCGGTATTGAACTAGCCCCCGAAGATGCCGTTTTACCGTGGCCTCTGATGGTCTAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAATAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAGAGAATCCATATCCAGTCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAGGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACATGTTTACGATCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTATACCTAGTCCTAAAAGAAACAGCGAAACCCATCCCAGCCCAACGCTAGCAGTATCACCAGAAAACTTGAGTATAAGGATTCCTAATACACCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCAGTCGCAGCCTTTCATTGAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1941136-1943425 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010818.1 Corynebacterium ulcerans strain 131001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1941136 29 100.0 32 ............................. CGCCACCGCCACTTCAATCGCTATAGCAACCT 1941197 29 96.6 33 ............................A CCGATAAGTGGGACAGCACGAAGGGTAACCCGC 1941259 29 100.0 32 ............................. CGAATTCTTGATCTCATCGACGGACATTTAAC 1941320 29 100.0 32 ............................. TTACAGGCCGAGGAGTTATTTTTCATGGCTAA 1941381 29 100.0 32 ............................. TGGTGATGCTAAGTGGGTTGAGTCGGGCAGTC 1941442 29 100.0 32 ............................. AAAAAGGGCAAAGTTGATCAGGTACGTGTGGG 1941503 29 100.0 32 ............................. AGGCTTTGAAGGATTCTGTGGCTGGCGCGATT 1941564 29 100.0 32 ............................. TCGCGCCTTCAGCTCTTCTATCTCCGCAAGAA 1941625 29 100.0 32 ............................. AGAATCCTGGCTCGTGAGCTTATCCTCAAGCT 1941686 29 100.0 32 ............................. TCAAGGAGCACCTGAAATGCTAAATCCCTACG 1941747 29 100.0 32 ............................. AATCCAAATCAGGGTCGAAAGATGCGAAAGCG 1941808 29 100.0 32 ............................. TGCGTTGGGAATCTGATCCGGTGAGGGGCCCG 1941869 29 100.0 32 ............................. AGAGCAGCTGAGAAAATCTGGTTTGAAGGCAA 1941930 29 100.0 32 ............................. GTTTTCATTTGTACGGTAGGCGGGTACAGATG 1941991 29 100.0 33 ............................. AGGATTGGAATCAGATTGCTAATGCGATCCCTG 1942053 29 100.0 32 ............................. ATTAAGCGTTTTGAGGGAAGGTGAAAGCGATA 1942114 29 100.0 32 ............................. GTGGCGAAAGCGGAGAAGATGTGCGTGTTTTT 1942175 29 100.0 32 ............................. GGCTATCTACCAGCGGAAACGATGTAAAGCCG 1942236 29 100.0 32 ............................. CATTCTTGTTTCTCCGGTTCTGTAGCAAAGCG 1942297 29 100.0 32 ............................. GCTGCGACTTCCTCGATCGAGAAAATGCCGGT 1942358 29 100.0 32 ............................. ATTTTCTATCCTCTTCTTAGTTGTTTTTCCAC 1942419 29 100.0 32 ............................. TTATGCCCATCAATATATTTATCGCCCATAAA 1942480 29 100.0 33 ............................. CCTTCCGGTGGATCTGGTCACGACGGTTTCTTT 1942542 29 100.0 32 ............................. TCCAGATCGACTTCAAGAAGGAGCAGCTGCAG 1942603 29 100.0 32 ............................. GATCACACGATCACCCTTCGCTAGGGAGTTCG 1942664 29 100.0 32 ............................. CCACTCCATGAAAACATCCTCCTATCACCAAA 1942725 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 1942786 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 1942847 29 100.0 32 ............................. ATCAACGGTGAGCTGCGAAATAAGCTCGGCGC 1942908 29 96.6 32 ............................T TGATAGTGATTAGCTGGTCAATCAGTGTTTCT 1942969 29 96.6 32 ......................C...... CTTGGACGTGTCCCGATCGTCATGATGATTAA 1943030 29 100.0 32 ............................. TGTTGAATCTGGCATCGACGAAGACGGAAAGC 1943091 29 100.0 32 ............................. CAGCCGATCTCCTACCCACTCTGTGGTGCTTG 1943152 29 100.0 32 ............................. GAAATCCCGCTAGACGCAGCTCTGAAAAATCT 1943213 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 1943274 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 1943335 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 1943396 29 82.8 0 ....................A...AGC.T | A [1943415] ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.2 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //