Array 1 64708-64190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPP010000020.1 Lactobacillus crispatus strain LB65 Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64707 29 96.6 32 ............................A TTAGTTTTTTAAATGATCCAAGTACTCCGCTT 64646 29 96.6 32 ............................C AATACTGCTGCAATAAATATTCATCTGCACGC 64585 29 100.0 32 ............................. CGGTTTGTTAAATTAATTGTATAACTTTTAAA 64524 29 100.0 32 ............................. CAACAAATTTATCTGCTGCAGCAAAACAAGAA 64463 29 100.0 32 ............................. ATGAAGTCAACTACGAAACGCCACATCATGAC 64402 29 96.6 32 ............................C TAAAGAAATTCAACTTGTATGTTCAAACAGTG 64341 29 100.0 32 ............................. TACCGTCTTAGATTTTGCATTTTGTGGCGTTC 64280 29 100.0 32 ............................. ATGCAGAGTGGCGTGCATGTCATGATTACAGG 64219 29 86.2 0 .............A...........AA.A | C [64194] ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTGGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21224-19666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPP010000021.1 Lactobacillus crispatus strain LB65 Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21223 29 100.0 32 ............................. ATCAAAATCTGATTTAATGGATAACAAAACAG 21162 29 100.0 32 ............................. TAAATTTATCTTGTGATGTCGAAGTTACTTAT 21101 29 96.6 32 ............................C TCGCATCCCTGTTTGGTGAGCAGATAATTAGG 21040 29 100.0 33 ............................. AAACAATGTCATAGCCATCGCTTGAATGAGTTA 20978 29 100.0 32 ............................. ATCCAAGCCGTTAGGATTACTCGTTTCATCAG 20917 29 96.6 32 ............................C CTTCAGCAATTAGCTTAGTTTCCGTTCTGTGA 20856 29 100.0 32 ............................. AGGCAGTCGTACCCAAATCAATGAATTTATCA 20795 29 100.0 32 ............................. TAAATTGGTCTGTATAAAAACCACAAGGTGCG 20734 29 100.0 32 ............................. TGATTAATCAGGCTTTACACTACATGGGTATC 20673 29 100.0 32 ............................. TACGTTTTTGCTAGCTGTATCTGCCGCTTTTT 20612 29 100.0 33 ............................. TAAAGAATTGGATGAAAAGGGTAAGCAGCTTGA 20550 29 100.0 32 ............................. CCAATCATTTTACTTGGTGATGATAAAAACGG 20489 29 100.0 32 ............................. TATTTCGGGTTTCTGCTATTTCAATGAATGGA 20428 29 100.0 32 ............................. GGTGCAATCGAAAAAGCCGTTAATGCGATGCA 20367 29 100.0 32 ............................. GTTGATCTTTCCAACTTCGATAAGCGTTTTAG 20306 29 100.0 32 ............................. GATGGTGCCTTGCCATGAACTTGAGGGCTAAA 20245 29 96.6 32 ............................C ATAAATGCATAACGATAAATCCAAAAACATCA 20184 29 100.0 32 ............................. TTCCGATCTCTTTCTTCAATCCTTTTAGTTGC 20123 29 100.0 33 ............................. ATTTTTCTGCATTTCATTAGCTTGGTTTGCTAA 20061 29 96.6 32 ............................C TAGATGATATCATTGTGGCTTTACAAGTTGAG 20000 29 100.0 32 ............................. TGGCACTCTGTGTTTGATAATGTTTTTTTAAC 19939 29 96.6 32 ............................C TCGATAAAAGCCATAACCCATACTTACGTCAT 19878 29 100.0 32 ............................. TGTGGGTGATGAATCCCATGAAGAAAGCAATT 19817 29 100.0 32 ............................. ATCAATTGAAACTGTAAACATTATTCGATGAC 19756 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 19695 29 82.8 0 ...........AC....T......T.A.. | A [19674] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGATATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCTGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATATGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24285-23951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPP010000021.1 Lactobacillus crispatus strain LB65 Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24284 28 100.0 33 ............................ TATATCAAGACAAATACGAGATGGAAGTATTTT 24223 28 96.4 33 ..................A......... TAAAATAAATGGTTTAAATCCAGAGCAACGCCA 24162 28 100.0 33 ............................ TTAAACAAGGCTATGGCTAATTTAAAGCCTGAT 24101 28 100.0 33 ............................ CTCGACAGACAGGCTGAGCAAAACAAACAGCCT 24040 28 100.0 33 ............................ TGTTGGTGATTATGTCAGGAAAATTGGACAAGG 23979 28 82.1 0 A......................A.ATA | C [23954] ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : GCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAATTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAAACACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 57192-56615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPP010000021.1 Lactobacillus crispatus strain LB65 Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57191 29 100.0 32 ............................. TAGTAAAATTGCCGATAAGTTTGGGGATGCTG 57130 29 96.6 32 ............................C CAGTACCAGTTGCATAGTGAACACCACCGACT 57069 29 100.0 32 ............................. CCAGGTATCAGATTTGATTCTGATGTTAGTTC 57008 29 100.0 32 ............................. TAAGTTTGATTTTCAGGATTATCCAGTAGATT 56947 29 96.6 32 ............................C ATTGTTAAAATCGCCCGTTTCAACGGATTGGA 56886 29 96.6 32 ............................C ATTGTTAAAATCGCCCGTTTCAACGGATTGGA 56825 29 100.0 32 ............................. AGTAAGCCTGAAACCGATAATAAACCAAAGTT 56764 29 100.0 32 ............................. AGCGTTAGAAGATGGTAAATAAAATTTATGGT 56703 29 100.0 32 ............................. GCACACCACTTTACCTTGAATTGGTGCGCATG 56642 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTAGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAAGCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTAAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : CCTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAAAAGTCCTAGTGATTGAAAAATCTAATCAAATGTATGGTGGTACCTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //