Array 1 261071-262098 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CDEM01000007.1 Streptococcus agalactiae strain Child9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	====================================	================================	==================
    261071	    36	 100.0	    30	....................................	AAAACCAATACTTCCTTCTGTCATGGCAAC  	
    261137	    36	 100.0	    32	....................................	CCCCCTTATCTGTTGCTGAATAGTAAATTTTA	
    261205	    36	 100.0	    30	....................................	CCATGTCCCACGCCCGCTGTATTGCTCTAG  	
    261271	    36	 100.0	    30	....................................	AAGAGATTCTAAAAAATACGGATGTGTAGA  	
    261337	    36	 100.0	    30	....................................	TGATAATTCATAGAGAGATGTTCAGCTAGT  	
    261403	    36	 100.0	    30	....................................	GTAACCATTACAGCTAACTCGGAAAGACAA  	
    261469	    36	 100.0	    30	....................................	AGACTTAGATTCTATTCAAGACATGGTTTT  	
    261535	    36	 100.0	    30	....................................	GCATTCTTAGATAAAATCATTTCTCCATTA  	
    261601	    36	 100.0	    30	....................................	TGTCAACAGTACGTGAGACGAGTGTGTAGG  	
    261667	    36	  97.2	    30	..............T.....................	TGAAGTTGATGGATATGTTGATTTAGAGCT  	
    261733	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA  	
    261799	    36	  97.2	    30	..............T.....................	AAACATCCGCAACGGGATAAATAAAGCTAG  	
    261865	    36	  97.2	    30	..............T.....................	AGTTTCTTGTGGGTTAGCTTGTCCACCGTA  	
    261931	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT  	
    261997	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA  	
    262063	    36	 100.0	     0	....................................	|                               	
==========	======	======	======	====================================	================================	==================
        16	    36	  99.3	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                                	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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