Array 1 35678-34854 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTO01000002.1 Prevotella intermedia strain NCTC13070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35677 36 94.4 30 .......G.G.......................... GTGGCGGCGTTAGCATTAATATATTACACC 35611 36 100.0 29 .................................... TTACTCAGGTAGAATTATTCAAGGTATAT 35546 36 100.0 30 .................................... GCAGCCAATTTTGAAATCAAACACAATGGC 35480 36 100.0 30 .................................... AAAGAAGCGTAACTCTCTTTTCAAAAGCTC 35414 36 100.0 30 .................................... ACAAAAGAACAACTAAAAAAAAGCGTTGAA 35348 36 100.0 30 .................................... TTAACCGATAGAGAGTTATTCTTACTCAGA 35282 36 100.0 29 .................................... CAATCGGTAGCTATTGCACCGTCTTAGGT 35217 36 100.0 30 .................................... TTACAGTATGCTCAAGAAATGGGTTATGAG 35151 36 97.2 30 ...................T................ TGTATTGCAGAACCGACACTTGCGGGTGCA 35085 36 97.2 30 ...................T................ CAAAACGAACTTTTAAATATAAAATGTCAT 35019 36 94.4 29 .......G.G.......................... CTTTTGCAGGTGGTATGATAAGTTTTTTA 34954 36 100.0 29 .................................... TTGAAAATAAAAAACTTAAATTATTAATC 34889 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Left flank : GATAACGATATGAGAAAACATCTTATCTTGCTCTGTACAGCGGCTTTCCTGTCGTCGCTGCACATCAACCGAAGCCAACAGAACCGAACGAGCCACCGCATCGAGCCGATGCAAAAGCCCCAACCACCCTTGCCGATGTCGCACTATCGGCAAAGCCGCCCTTGTGCTGCCGTCCGAATCCACGCCACAACCTCTACACTTTCCACGACGTAAAACCACTCCTATTTTGTAAAGATAATTCCATAGAAAAACCATAATTTCGATTTTACATTCCAAAAGCGGCTCTTTTGCAACGCAAAAGAGCCGCTTTTACCGTGTAAAACCTACGCTTTCGCAATGCAAAACAATAGGTTTTACAATGTGCTGATAACGAGATAGTTACGCAATAGTTTTGCTTGTGAAAAATATTTACACCTTTCTCGCCTTTTTTCACCCCTTAAAAGGCGTGTTCCCCCTTTCATTTTTACTTCCCTCAGTTCCATTCCCTTGCTTGTTAATAA # Right flank : CGCACCTAACCTAACTGTCTGATTCTTATATGTTTTGTTTCTTTCTTTTCCACCAGTATTTTTTTCCTTTCTTATTATGGTTATATAAATTTCGTTGTTGTAAATCTATATCTTTTCTGATTTGTATTGAGAGGCTCTGGTTAATTTCTATCATTTCCTTTACAACCTCCCGATTATGTATCATTATCTTCTCATCAGGGTTGTTCTTTTCAGCAAGCAAAAGTTTATGAACAAGGGTTCTATATTTAAATATCAGCGACATAACCTCTTTTGATAGATAGATGCCATTGCCTTTGTTGTATACCTCTTCGGTTAGCTCTTTGAAGAATTGGCGTATATTGGCTTGTCTGAAGTAATAAGTTTTCTCTCCGCCATCCTTAGGCTGTTCCCACACCAGTATGCAGTCGTCATTTTCTGTGTCTGTGGTAAACCTAAGCAATTTATAAATGCTTTGGTGTGCCTTCAGTATAGCTTCATAGTGCGCACGTTTAATGTTCTCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTTTACCTTGCAAACAGCAGGCAGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 1558271-1559088 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTO01000001.1 Prevotella intermedia strain NCTC13070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1558271 47 97.9 30 .....................................C......... ACCCACAATAAGAAGAACTACTATCTGCCT 1558348 47 100.0 30 ............................................... TAGCAATGGTGCTATAATATCCTCCAGGCT 1558425 47 100.0 30 ............................................... TTGTTGTGTAAAGGAATCGGGTTAAAACCC 1558502 47 100.0 30 ............................................... CCAATGATGTGAGCGTGTCTACAGCCGTGT 1558579 47 100.0 30 ............................................... AACGTATTCAGTACCTAAAAAACCTAATAC 1558656 47 100.0 31 ............................................... GATATCCTAGGTGCTTATAATGATGCCAGAG 1558734 47 100.0 30 ............................................... CCCTCTGAAATTTTATTGAAAACTATACAC 1558811 47 100.0 30 ............................................... AACTTCCATTTTCATAATGTGTTACTCCTT 1558888 47 100.0 30 ............................................... GGGGGCTATACACGCCCCCACGTTGTTTTA 1558965 47 100.0 30 ............................................... ACAAAGACGCTGAAAATAACCGTCTTGCCT 1559042 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 11 47 99.8 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : GTAACTTTGATGACTTTTGGGAATATGGTAAATTAGTGTTTAATACGTTAATCTTTTTAGAGCGTTATCTCTATTTGAACATTACAAATTCTTTGCGAAAAGGTATTAACATAAACTTTCTTAAAGATTATTCTACTCAAGGTTTATATAGAAGAATGGCTACAAAAGTAGGTTGAGCTGTATCATCAACGCTATGCCTGTCGCCTAAAATAAAACGTAGTTTCTATGAACGATAATATTACTTGAAACACCTTACAGTATACAGCTACTACCGACCATCCATGTTGAGGCGAATAGTCGAAGTAACTGTATTGGAACACTAATCTATATTTCAAGATGTATTAAAGTAATTGTTCATAGAAAACTACGTTTTCTTTACTTATAGCAGGTAAGAAGAGTAAGCTGATGAGATTTAACAAATATTACAAAAAAAAACAGCTGTCTGAATTGTACAATTATAAAAGTAGGGGTAGTATTATATATAATCACCTAAACAAATT # Right flank : CTCGTCCACTTTATGCCCTTGTAGTTCCTGTGTTGTGATTAGCTTTAAAATTAACGTGAGTTCGATATAAGAAAGTTGTTTTAAAAGTTGTAGGAGTGGAGTATTTTTTGTACCTTTATACTTGTAAATAAAAGAGTTACAAACAAATACCCACTCCTATGACTGATACAAATTTAATAGAAATATTCTGTATATTCGACGATTTTTGCAAGTATTTTACTCCTGAGTTGAAAAAACATACGCTTCAGGTACCCGGCAAGCGGCACCGCAACCGTGCTTCCCGTATGTCGGACAGTGAAATCATGACCATTCTGGTCCTGTTCCACACCCACCGTTTCCGAGACCTAAAGTCCTTCTATCTGGGCTATATCTGCCAGCATATGCGTGGAGAGTTCCCACATCGGATTTCCTACAACCGCTTCGTCGAGCGGCAGGCACAGGTCGCACTGCACCTGTTGCTGTTTCTCCAGACATGTGCACTGGGCAAGTGTTCAAGCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 1560149-1562429 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTO01000001.1 Prevotella intermedia strain NCTC13070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1560149 46 89.4 30 T..A....C.-.G.................................. TGAATTAAAAGAACGTGGAATAATGCCAAG A,C,AC [1560150,1560154,1560157] 1560229 47 100.0 30 ............................................... GTTCCTTTGAGAGTATGGCCTTGCAAAAGC 1560306 47 100.0 30 ............................................... CAATTCGGCACAGAAAAATCTTCATAAAGG 1560383 47 100.0 29 ............................................... AGGCTTCAGAGTGTTATGTAGCTGTAACA 1560459 47 100.0 29 ............................................... CCCATAACTATTTTGTTTTGTCGTTTCCT 1560535 47 100.0 30 ............................................... TCGAAGCCTACGCTCGCCACCGCACGGTGG 1560612 47 100.0 30 ............................................... CCTTGCCCACTGCATCGCATTGATGCCGTC 1560689 47 100.0 30 ............................................... GAACTCCAGTACAACAAACGCATCATAGCC 1560766 47 100.0 30 ............................................... CTCGGCAGTCATTTCAACTTTTACTTTGTC 1560843 47 100.0 30 ............................................... TTGATAAGTATAAAGACATGCCAAATGTGG 1560920 47 100.0 29 ............................................... TGCTGCGTCCTACTTGACTTGCATTTGTA 1560996 47 100.0 30 ............................................... ATAATCACCAGATAAGCTTGTATCTACAGG 1561073 47 100.0 30 ............................................... ATTTGAAGATTATAATATATCTGATGAAAA 1561150 47 100.0 30 ............................................... GTTCTAAATGAGAAATAAATGCGTTTAATT 1561227 47 100.0 30 ............................................... TATACCATTATCACAAACAATATTTAATAT 1561304 47 100.0 30 ............................................... ATCATTCATTTTCTTAAGTGTATCGATGGT 1561381 47 100.0 30 ............................................... CAATTTGTTTTCCAACACTCCACTATCCAT 1561458 47 100.0 30 ............................................... GATATTAACGCAAGCGATTTCAACGATGAC 1561535 47 100.0 30 ............................................... CCTTAGAGTCTACATAGGTACGAGCAAACC 1561612 47 100.0 30 ............................................... CATCAAAGTCAGCGTTTGGGAAGTCGAAAC 1561689 47 100.0 30 ............................................... TTCAAAGGAGTGAGTTTCAAACGTTTAGCC 1561766 47 100.0 30 ............................................... TCTACATATATCTACTACATTAAACTATCT 1561843 47 100.0 30 ............................................... AATGGATAGCTAAATACATGGCATTCATTC 1561920 47 100.0 31 ............................................... ACTCTGAAAAGAATAGACCTTTCAGAGGCTC 1561998 47 100.0 30 ............................................... TTCACCATAAATAAATTAAATATCCATATA 1562075 47 100.0 30 ............................................... AAGGCGGTCGAGCGACCGCTTGATGCGTGC 1562152 47 100.0 30 ............................................... AATAGAGAAATCACCAACCTTTAAGAAACT 1562229 47 100.0 30 ............................................... TTGATATCATTGGTATTTTTTTCATAATTT 1562306 47 100.0 30 ............................................... ATAACACTCTGAAGCCTGATGAAAAGTAGG 1562383 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 30 47 99.6 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : CCATGAGGGGCTGGGCGGCAAAGGGAAAGTGCACCATGGGCTGGTTCTACGGATTCAAGCTACATCTTGTCATCAATGACAAGGGAGAGATTATCCAGTGGAAGCTCACGCCAGGAAACGTAGATGACAGGGAGCCATTGAAGGATAAACGCTTCACCGAGAGGTTGTTTGGAAAACTCTTTGCAGACAGGGGGTATATCAGTCAGAACCTCTTTGAGATGCTCTTTGTGGACAATATACATTTGGTGACCAAGATAAAGAAGAACATGAAGAACTCACTGATGAGCCTGTATGATAAGTTGTTGCTCAGAAAACGTTCTGTCATTGAGACAGTGAACGATGAACTGAAGAATGTATGTCAGATAGAACACACCAGACATCGCTCTTTTGATAACTTTGCAACAAATCTGATAGCAGGACTCATTGCATACAATCTGTTGCCAAAGAAGCCAGAAATGAACATAGAGATAATTGATAAAAGCAGGATAATTGCATAGAGC # Right flank : CTCAAATAGCTTAAAGCAATGAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGTTCTAACTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGTACTTCCATATTTTCTTTACTACCACAATGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTACTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTATATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //