Array 1 182398-182548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000013.1 Streptomyces sp. NRRL F-3273 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182398 29 100.0 32 ............................. ACCGTCGTCCTGACCGACCGTACGCAGCCCGA 182459 29 100.0 32 ............................. GACGGCCGCCCCTCGGGTCCGGACGAGTACCG 182520 29 93.1 0 ...T................A........ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCGAGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGGTCCAGGGGGTGCTGACTTCCGCCTACCTGGCAGCGCATTCGAAACTTAAGGCCGCATATGCCCGACTCTCAAGAGGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CCACGGGCTCACCCCGCCCGGCATCCTCGCGGCGGTGCTACCTGCGTGCGGGGGCGCCCCCTCCACACCCCCACCCGGCTCCACCCAGCCGGGCGCCCCTCCCCATCGCGATACGCACAGCCACGGCCCTCATCCACCCGGCAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCGCCGAACCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 186715-187048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000013.1 Streptomyces sp. NRRL F-3273 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 186715 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 186776 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 186837 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 186898 30 100.0 31 .............................. CGGCCGCGCTCGTGAACTGGCGGATCACCAC 186959 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 187020 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTCACCGACAAAATCCCACCCCACATCCCCAGGTCGACAGAAGACCGATCGCCGGACACCAAGGAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGCGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 190335-190790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000013.1 Streptomyces sp. NRRL F-3273 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 190335 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 190396 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 190457 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 190518 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 190579 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 190640 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 190701 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 190761 29 80.0 0 .........C..-GT......C.....T.. | G [190769] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTAATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCTACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTACGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : GCGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70112-67076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000032.1 Streptomyces sp. NRRL F-3273 contig32.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================================== ================== 70111 33 93.9 28 ..............................G.T CGCGGCGGTTGAGGCGCGCCGAGCAAAG 70050 33 93.9 28 .............................T..C TGGGCTTGCCCCCGTACACCATCGACTC 69989 33 90.9 28 .............................AT.A GGTTGCCTTCGTCGTCGTAGTAGGTCCG 69928 33 100.0 28 ................................. TACGCCTCCTGCTGGTTCTGGTCCTTGG 69867 33 90.9 53 .............................GA.C TGGAGAAGCGGGCCGACGAGCTGAGTCGGTCCTCCCCGCCGACGCGGGGGTTC 69781 33 93.9 28 .............................A..T GGACGGTGCGGCCGACCTTCATGTACCG 69720 33 97.0 28 ..............................G.. GGAACTCGCGGTGGAGTGCGCGCAGCTT 69659 33 100.0 28 ................................. GGAGAGCCTCCTGCGGATCGTGCCGGTG 69598 33 87.9 28 .............................TTCA GCAGGTCGAGCTGATCGACCGGTGCGCC 69537 33 87.9 28 .............................TTTC CATGGCAACCCCAATCCGAGGGAGGGGG 69476 33 93.9 28 ..............................G.T ACGCGACCCACACCGGGCTCGGCCACAT 69415 33 90.9 28 .............................GA.T GATGGCCGAAGACCGATGGGACGAGCTC 69354 33 93.9 28 ...............................CT TGCCCATGCCGGTCATGCCCTTGCCGAG 69293 33 93.9 28 .............................A.C. GCTTACCGCGGGCGACGATCTCCTTGCG 69232 33 93.9 42 ..............................G.A GATCGGGGCGGCTGCGGCCCAGGCGGCGGTCCTCGCCTGGCC 69157 33 90.9 28 .............................AAC. TGACGTCGTCCATGAAGGTCTCGTACTC 69096 33 90.9 28 .............................AA.A AGACCGACGAAGAGAAGGCCGCCGCCAA 69035 33 90.9 28 ..............................GCA TCAACGACCAGCTCGGCCGCCAGGTCGT 68974 33 93.9 28 ...............................TT CTGGCACCTGACCCTCGCCCAACTCCTC 68913 33 97.0 24 ................................A CATGAGCGACACCGAGATCCAGCT ACAG [68881] 68852 33 93.9 28 ..............................GA. CTGGTCCCGGTGGACATCCATCTGTCCG 68791 33 93.9 28 .............................AA.. CCAAGGAGTTCGGGGCCAACCTCGCGAA 68730 33 90.9 28 .............................G.CT GTCCAAGGCCGCCGCAGTCCGAGTGGTG 68669 33 97.0 28 ....................A............ ACCGCGGTAACCCCACCGTAGGGGTGCC 68608 33 90.9 28 .............................ATC. TGACGGTGCAGTTCGGGCTCGACAGTGG 68547 33 90.9 28 .............................T.CA CGTTCACCGTTCAGAGCTGCACGAACGC 68486 33 90.9 28 .............................AA.C GCCCTACACGGTAGTCGACGTCCTCGGG 68425 33 100.0 28 ................................. CCACCACCCCGTAAGGAGACGGCATGCC 68364 33 97.0 24 ................................A GCAGGAACACGCCGGGACCTTCCT TAAG [68332] 68303 33 100.0 28 ................................. TCTTCTCGTGGCCGGTGTACCGCCGGTC 68242 33 97.0 28 ..............................T.. GGCTGGTCCTCGCGGGCTACATCGGCCG 68181 33 90.9 28 ..............................TCA CCGCCCTCGCCGCCCGCCTCGCCGGCAA 68120 33 93.9 28 .............................AA.. AGAACCCGGTCCACTTCTCCACCACGGC 68059 33 97.0 28 ..............................A.. GCAACATGATCTGGTCCGGTGGGAAGGT 67998 33 90.9 3 .............................AGT. GTG Deletion [67963] 67962 33 93.9 28 ..............................TC. CGGCGGCGGGTACCGGTATCGGTCTGCT 67901 33 93.9 28 .......T.....................A... TGACCTCGCTCAACACCCCCACCGAGCA 67840 33 87.9 28 ...........G.................GT.A AGACACTGGAGCCCGCGGTCGGGCCGAC 67779 33 93.9 28 ..............................G.C AGGCGGCCCGCCGGGCCCGCCGGTGGGT 67718 33 87.9 28 ............................CA.TC CAGGACGCACCGGATCGCGTGAGGACCT 67657 33 90.9 28 ..............................GCC ACATCACGGAGGCCCTCCGCGCCGAGCT 67596 33 90.9 28 .............................GT.C GGCATGCGGATACGGAGGACTGGGTGGT 67535 33 90.9 26 ............A.................T.C GTGTGGATCGACGCGGACGACGAGCC AA [67505] 67474 33 93.9 28 .............................T..A CCTGGTCTGGGTTCACCCGGCCGCAGGC 67413 33 93.9 28 ..............................G.C ACGAGTCCGGCCGGGAGGGCGGTGAGGC 67352 33 93.9 28 ..............................A.C CGCACGGCGACTGCGCGAAGAGGAGCAC 67291 33 90.9 28 ...T.........................GT.. TCCGGATGACTTGTGTGACGACGATAGG 67230 33 93.9 28 ..............................A.C GGGTCGCCGGGGTGGAGTACCTGTCGTG 67169 33 93.9 28 .............................A.A. CTCCCTTACAACTGACGGGCGCGCGGGC 67108 33 90.9 0 .............................GAC. | ========== ====== ====== ====== ================================= ===================================================== ================== 50 33 93.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Left flank : AGGCCAGCACACAGCCCAACAAGCGCCCGAGCGCGATCCTGCTCCCCGGCCAAACCCATTCCTCGAGCTATACACACCCTCTGGTTCTCCGACAGGTACACATCCCACAAGTGAAGCGCCATCGCAGCCGCGTCAAGAAGATGTCTCACCAGCGGGTAGGGAGGCAACGCCGGATCCAACCCACGAAACTTCCCCCACGCCGATTCATCCACCACGCTCTGTCTCTGCAACACGCCAGCCCTCCCTGATCCGCCACTCGCCACGCTCCCGCGACCTAAGCCAACCTGCCACCAATCGCATACAAGCACCGGCACTGACAGTGATACCGCTACTCGCAGTCCGACGTCCGCCAATCGGTCAATGACGGGCGTCGTGCTCGCCTCGACTACCTTGCAAGCTGCGCCTGGATACAGTGACGGCGTGCAACTGACTGAGCGCCTCACCCACTCAAGAATGGCAAAGGAAGTGCAAAGCCACTCTTAAGGTGCAGGTCAGGAAGT # Right flank : CACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGCTCGCCTGAGAGGCGTTGCAAGGCTACTCCGGGAGTGCCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGGCGCATAGCTCCTTGAGGGCTTGGCGGCCGTCGGCGAAGTGCTCCTCGTTCCCGAATTGTTCGCGGAGCTGCCGTTCGGCGGCGGCCTGGATCATCGGGTTGGTGTGCTGCTGCCTGCTCCAGGTGGCGCGGTGGGCGGCGATGACTTCGCGGTAGCCCTCCGGCGGATCCGCACGCCGCATCGGCGCTGCGAGTGCGGTCAAAGTGGAGACGGTTCGGCGGCCGCCGTGGCGGGGGCGGCGACCTTTACAGGTGCGGGCGCCAGGACGTTCAGGGCGCGGACGTTCGCGGCGGGCACCTTCTCTTTGGCCGCCGCAATCAGCTTCGGCGCGCTCCAGCGCAGCTGCGTTGCG # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79999-81189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000032.1 Streptomyces sp. NRRL F-3273 contig32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 79999 33 93.9 28 .............................A.G. TCTCCGCCCTCTCCCAGCGCGAGGGCGA 80060 33 93.9 28 .............................G..A ACACCGCCCTCACCAGCGACGAGGTTGA 80121 33 93.9 28 ...............................TC GTTTCCACCGCAGGACAGACCCCGTGGC 80182 33 87.9 28 .............................ATGT CGGTGACGGGCCAGTCCCAGACGGGAGC 80243 33 100.0 28 ................................. CCCCGGGGTACCTCGAGATGCCGGACTT 80304 33 87.9 28 .............................CTGC CCGCCGGGCCCGCGAGGCGGCCGAAGCC 80365 33 90.9 28 .............................G.GT TCGAGTCCGGTGGCATGGAGCGGGCCAT 80426 33 100.0 28 ................................. TCGTCCCGGTCTACGGCGCGCGCCCCGA 80487 33 93.9 28 .............................GG.. ACCGCGGAAAGGCTGACAGCCCATTCCC 80548 33 87.9 28 .............................CATT CACCGAGGGCACCAGCGACTACCAGCGC 80609 33 87.9 28 .............................CTGA CCGCAGCCGAGCATTCGCGGCGCATGGT 80670 33 93.9 28 .............................CA.. CCCGCACCGCCGCCGACGCCTGGACCGC 80731 33 90.9 28 .............................C.GT GCGCGACGCCCTTGGACGGGTCGTCCCG 80792 33 97.0 28 .............................G... AGGCGCACTACCGCGAGACCGTACTCAA 80853 33 90.9 27 .............................C.GC CGAGGTGGCCGTGCGCGCGGCCCGAGC 80913 33 93.9 28 .............................G..A ACGGGTCCTCGGCCGCCCTGTCGCACTT 80974 33 100.0 28 ................................. GCACGGGCTGGCTGATGCTGGAGTGCTG 81035 33 93.9 28 ...............................GA AGGGGAGAGCCTTTTCTCGTACGCCCGC 81096 33 90.9 28 .............................CAT. ACGCTCGTTCAGCCCGAGGCCACCACCC 81157 33 87.9 0 ..............G..............A.GT | ========== ====== ====== ====== ================================= ============================ ================== 20 33 92.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Left flank : CCCACGCATCGTCCGGGACGTCCAGAGCCTCCTGACACCACGCTCCACAGATGTCACCGACGAGGACGAACCACAGGAGAAGCGCGACATCCACCTGGTCCACCTCTGGGATCCCAAGGCGGGCGCCCTTCCCGCCGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCCTGCTCGTGATCGCCACCACGGCCGTTCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGAACAACTCTGGCAGGCCGTTACCGAGACCGTGGAGAACGGAGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCGGTCCGAACCGCTGGCACCCGCCGCCGCGTCCCCGCCGATTTCGACGGACTTACCCTGATCCGTATGACCGCCACACCGAAGGTAAAGGAAGTGCAAAGTCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : TACGCACCGCCCTCCAGGACGACCTCCGGATTCGCCCCGCCGACGCTGTTGTACAGGGCTGGCGCAGAGATCGGACCGGCAGCAGGAGGGGGTGTGCGTCAGCTCGTCGAGGGGTTGACGGTGAGGGCGGCCATGTTGTTCGTCAGGTCGGGGTCGAAGGTGCGGACAGGGGGGTTCGTAGGCGTCGTTGTAGAGGGCGGCGCGGCCGGTGGCGTTCAGGGATGACCTCACGATATGGAGGCCGAAGGGGAAGGGTGTGGGCGGCGAGCTTGCCGGATTCGGTGAGGTAGATGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGAGACCAGCAGCTGTCGGGGGCGGAGGCGACCGAGGTGCCGACGGGGATGTCGATGTCGACGGTCGCGGCGGGTTCGCCCGCGCTGAGGGAGGCGACCCAGGCGGGGGCCCGCGTTGTGGACGGGGACGGTGTCGCCGGCCGCGCCGGAGACGGTGGAGGCGGTCAGCCGGTAGTC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10326-10719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000072.1 Streptomyces sp. NRRL F-3273 contig72.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10326 29 93.1 32 A...........................G CCGAAGACGGCCCGCGCACCGCGCCGCCCGAA 10387 29 96.6 32 A............................ GTGGCGATGGGGATGGTGACGGTGCCGCGTTC 10448 29 100.0 32 ............................. CGCGGATTCGACTTTCACACAGTGGAGGAGGA 10509 29 100.0 32 ............................. GCCAGGTAGGTGCCGTCGGCGGTGTCGCACCC 10570 29 96.6 32 ............................T TCCAGGACGACCCGCAAGGTGTCAGTGATGTA 10631 29 96.6 32 ............................G CTCCGGAAGGCTTGTGCTGGAGTGCCGAAGGC 10692 28 89.7 0 ............T............-..G | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : AGGCGGCCTGAGGGATGCGTGATCTGCCGCCCGACCTGGAGCGCCTGCGCGTCCTGGAGACCTGGCTGCTGCTGTCCCTGGACCGTGTCCGCGAGCAGATCGCGGCCGTCGAGCGCGAGACCTGCCCGCACCGGGCCCCGGCGCCCCCGGCCGGGCCCCGGCCCGCCGGGCCGCCGGGTCCGCCGACGCCTGCCTGGGGCATCGCGGACGCCGGTCTCGGCATCCCCGCTCCAGAGGTGCACCGCGGCGACTGCTGGGCGCGGGGTGCGACTCTGCGGCCGGTCAGCGCAGAGGAGGCCCGTACCGCGCTGGCCGAAGGGGTCCAGGCGTGCGAGGTGTGCCGCCCGGACCGGGTCCTCACACCATGACCCCGCAACCCGGGGGGTCCTGTCCGTGCGGTGCCGAGTCCGGCTAGGGGGTGAAGCGGGGGACTTGCCCCGCTCGCTCACGCCCTGGAGGCATCATGATCGTTCACTTCGTCGGCGGCCCGCTCGCGAAGC # Right flank : GTGACCCGGCTGTAGAGGGTTTGGGTGTGGAGACGCCCGGGCCCGTGGCGGATAGGGTGCGGGGCAGACCGCGCCGTATGGGTGTGCGGGACAGGTCCGGGTCCCCTGGAGTACGGCTCGGACCCCTGGTGCCGGTGGCTACTTGGCCGCCGGTGCCAGGTCCGGGCGCAGCCGTTTCGGGGCCTGGGCGGGGAAGTGGCCGGCACCCTCAGTCCGCTCACGGGGGTGGGGCGGGTGGCACGGGTACCGGCCGACCCCAAAGCACAGCCAGCACGCCGGCCGCACCTTGCCCGGTGAGAGTAGTAAAGCTAGTGGCCTTTTCTCGTACCCCGTACGTCAGTTGAGAGGCCCCTCCGTGATCTGTGCCGGTCGCCGTCATCTCGTGCGCACCCTCGCGGACCTCGCCGCGCAGCAGGGCATAGAGCTCCAGACCTTTCTGAACCGCGCCCCCCACAAAAGCGCCGGCTACCCCGCGCCGGTCAGCTCCCCGGGGGCGCGGG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22811-23085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000059.1 Streptomyces sp. NRRL F-3273 contig59.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 22811 30 100.0 32 .............................. GCTCGGCGCGGGCCTTCTTCCGCTCGGCCTTG 22873 30 96.7 31 .............................G CCGTCCCTGACGACGTCATGACGCAGGCCAG 22934 30 96.7 31 .............................C GGTCCTGCGCGACACGTACGGGGTGACGATC 22995 30 96.7 31 .............................T GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 23056 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 98.0 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : ACCGACAAAATCCCACCCCACCTCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCGCACACTCACGGCGGCGAGTCCACCATCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGACCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTGAAAACCGTCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGCACGGCTGCGCGCCGCCCTGTGGTCCCGCGAACGCGGGGGCGACCCTGCGCCCCCGCGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27676-27955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000059.1 Streptomyces sp. NRRL F-3273 contig59.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27676 30 93.3 31 ........T....................C TGCACCGTCGCCAGGCGAGCGCGCAGGACGA 27737 30 96.7 31 ........T..................... AGCGCGCGGTGTCGTAACAGGGCTCGGCCGA 27798 30 80.0 37 ..............G.......G..GGGG. GTCCCCGGCCGCACTGGCACTACCGCACCGTCGCCTG 27865 30 100.0 31 .............................. CGGTGCGAAAGCCGAGCTGCGCCCAGACCGG 27926 30 93.3 0 ............................GT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.7 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCGCTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGCCCAGGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGCGGCCCGGGAGTTGAGCGCGGCCAGCAACGGCGGCACGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAGGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : TCGAGCCACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGAAGATCCGCCCCTACGCTTCCGACGCCCCCGACACCGCCACCCGGAACCCGACACCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAAAGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACGAGGTTGGCCAGGCCCGTGCGGTACTCCTCGCCCCACGGGAACTCCCTGCCGTCGTCGCCGCGTGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGTACGGG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCTGCGCACGCGGGGGTGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 2595-2321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIO01000079.1 Streptomyces sp. NRRL F-3273 contig79.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2594 30 100.0 31 .............................. CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 2533 30 93.3 31 ...A.........................G GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 2472 30 96.7 30 ...A.......................... GGGCGAGGGCGGCACCATGACGCCCGGCCA 2412 30 93.3 31 ......................C......G CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 2351 30 83.3 0 ...T......T...............A.TT | C [2325] ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : GTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGGGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCTCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACTCGTAGGGTTACAGGGATCGAGCACGAAATACCAACCCGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCCGAGCAGTTGGCATGGCGCCGGATCACCGCGCAGCACGGCGACCGGCTCGGTCAGATCA # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //