Array 1 9444-12645 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQI01000026.1 Oceanivirga salmonicida strain AVG 2115 contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9444 36 100.0 30 .................................... CGCTACTCTATTGTAGGTTTTTTCGAAGTT 9510 36 100.0 30 .................................... AATAAAATTATCGCCATTTAACAAAAAATA 9576 36 100.0 30 .................................... GTCTTGATTTATATATTGTTTAATTCTATT 9642 36 100.0 30 .................................... ACTTTCAAGTATGTCGCATTCTACTGATAC 9708 36 100.0 30 .................................... AACAAAACCTTGTCAAAAGGTTATTATAAG 9774 36 100.0 30 .................................... ATTATATATTTTCTCTTTATTAATCTGCAT 9840 36 100.0 30 .................................... AAAGTATATTTTTTTATTCAATGTTAAAAA 9906 36 100.0 30 .................................... AGAACCTATAATAAACAATATCAAAGATTT 9972 36 100.0 30 .................................... CTTTCTTTGTGTATGTCTAAATTTCTCAAT 10038 36 100.0 30 .................................... GAACTTAACTATTCAAAGGAAAACAGAACA 10104 36 100.0 30 .................................... TGTGGTATAATTTGGCTACCATCTGGTAAA 10170 36 100.0 30 .................................... TTCCAACTACTCCAAGTGTTATTTTTATAC 10236 36 100.0 30 .................................... TCGTGAGTTTGTTTATTATTGTATATTTCA 10302 36 100.0 30 .................................... ATTATCTCATTTTTATATTAATTTATAATT 10368 36 100.0 29 .................................... TGCGAGAAAGAGAGGACAACGCAGTTCAA 10433 36 100.0 30 .................................... GAGATAATTTATACATATTTAATCTCCTTT 10499 36 100.0 30 .................................... AATGAAAATATAAGAATGTCAAAGTAATGG 10565 36 100.0 30 .................................... CACCTGGTTTTTATTCAAGTCAGTTATAAG 10631 36 100.0 30 .................................... AGTCAATGTCAATTCTCGTTCAACATTTTC 10697 36 100.0 30 .................................... ATTTTTATGTTAAATATACTTTTTTATACA 10763 36 100.0 30 .................................... AAGATTTAGAATAGTAACCTAATAATATCT 10829 36 100.0 30 .................................... CAAAGATTTTAGAAAAGCAAATTCAGTTGC 10895 36 100.0 30 .................................... TCGCATTGTTGCGTTTATTTTTTTTCTTAT 10961 36 100.0 30 .................................... GAGATAATTTATACATATTTAATCTCCTTT 11027 36 100.0 30 .................................... TAAAGAGATAATGGAATATAAAAGGTATAA 11093 36 100.0 30 .................................... CTTTTCTTGTTGTTCTATGTTGTCATTATT 11159 36 100.0 30 .................................... AAGATTTAGAATAGTAACCTAATAATATCT 11225 36 100.0 30 .................................... TTTTCATGTCGGCATTGACACTTATAAAAT 11291 36 100.0 30 .................................... TATAACCTAAAACCATTATAAATATTAAGT 11357 36 100.0 30 .................................... TTTAGTTTTAGATATAATTTAAGTTATTTT 11423 36 100.0 30 .................................... ATTTACTTGATAAAGGGTATACAGAAGAAA 11489 36 100.0 30 .................................... AAGGTAAAGAAAAATAACTTAAATTATATC 11555 36 100.0 30 .................................... AGAAAAAGGCTAATATGAACCATGAATAGT 11621 36 100.0 30 .................................... AGTAAATTTGATGGTTTAGCACAATACAAT 11687 36 100.0 30 .................................... ATATATAAAGACACTTTTATTAATATTTTT 11753 36 100.0 30 .................................... ATAATTGTAAAAGAGAATTTGACAAAAACG 11819 36 100.0 30 .................................... AACCATCAACTTAATTACCTTTTTTATTAG 11885 36 100.0 30 .................................... ATTTACTTGATAAAGGGTATACAGAAGAAA 11951 36 100.0 30 .................................... AAGGTAAAGAAAAATAACTTAAATTATATC 12017 36 100.0 30 .................................... TCAGCCATTTCAACAGTTACTTTATATGAA 12083 36 100.0 30 .................................... AGAAAAAGGCTAATATGAACCATGAATAGT 12149 36 100.0 30 .................................... TAATCCTTCTGTTGATATTATCATTTTAGC 12215 36 100.0 30 .................................... ATAACAATATACACTATTAACAACTATATA 12281 36 100.0 30 .................................... CATCGCTTCATCATAGTCTACTATCTCGTA 12347 36 100.0 30 .................................... TTGATTTATTTTATAACTTTAATTAAAATC 12413 36 100.0 30 .................................... AGATGCTCTTTTAAACTTTTTATACTCACT 12479 36 100.0 29 .................................... TATATTATATTTGCTTTTTGCTAAGTTCA 12544 36 94.4 30 .......G..T......................... ATTCCATTCTGTTAAGAATAGCAGTGAAAT 12610 36 88.9 0 A.......T.................T....T.... | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 99.7 30 GTTTAAGACACCTTTAAAATAACATACTTCTCAAAC # Left flank : AATTTTTATCTATTTTAGAGATTTCATTTTCAAAAATTTCATTTAATAAATCTAATCTATATTTTCTCCTTTTTAATCTTCTTCTTGAATTTCTAAATATTCTTCTTTCCGCAGCAGTTTTTGCTTCATCAAATAGTCTACTTCCCCACATTCTTTTTCCATTAAATTTAAATATATTATACTTTTCATCAGTAACTGCCCATCCTACTGAATTAGTCCCTATATCTAAACCAATATAATAATTTGGAAATTTTTGTTTAATTTTCAAAATTATTCTCCCCTTTCATTTCAAAAAACTTGACATTTCCAAATTTTTTGATATAATATTATTAAATAACATACTGAGTTCAAATAAAAATTTTTGAACCCGCATATGTGAATATGCTAACTTCTGAATAGTCAGAAGTTTTTTTATTTTATATTTATAATCATAAACCTAATAAAATATTAGGATTTTTTTATTTTTAGTTTATAAGGTACATCTTAAACCTCAATTTGAG # Right flank : CTATCTTTATCAACTTCTTAATATCTATATCTTTAAGATTATTTTGTTATTTTTTTCATAATATATAGTATTTTATACCACATTATTTAATTTTTATCAATACTAAAAAAATTAAATATGATTTTTTACAATAATTTCAAAATTGTTTTATATAACATATCAACTTAATTAAGTCTATTCATACTTGTAAAAATAGTCATTTTTCTTTTGTATTTAGTCTTTACTAATTCATAAACTCCTATTTATTTTTATATACAAAAAAACATGCACATTATTTTTCACAATTAGTTTTATGTTAAATAGTACATGTTTTATTCTTTTTTATTTTTTTATCTTAATTAATAACTTAGTATTTTTATATATTCCATACCCTAAACATATATATATAACAAAATACCATATATTTCTTAATATTATAATTTTACTATGTAATGAAAAAATAGTATTAAATATATTATAAATATCACTATTGGCTTTTATTTCAATAATAACATTATTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGACACCTTTAAAATAACATACTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //