Array 1 45154-46636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEDS01000005.1 Staphylococcus agnetis strain 722_230714_2_5_spleen contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45154 36 100.0 30 .................................... TCGATATGTTTTGGACACTAACATTTGATC 45220 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 45286 36 100.0 30 .................................... CTGAATCCGATGGATAAAAAAGCCTATAAC 45352 36 100.0 30 .................................... ATATATTTTTCTTCTGATTCAATTAGGCTC 45418 36 100.0 29 .................................... CGTAACTAGAAATGGTAAGCGTGAATGTT 45483 36 100.0 30 .................................... ATTCGCAATATCAATTGAAAAACCAATCAC 45549 36 100.0 29 .................................... GTAATTTAGAACCAACTTTAGTCGACTCA 45614 36 100.0 30 .................................... GCACGATATCAACTAATATATCGACGAAAC 45680 36 100.0 29 .................................... TTTGTCTCTTTTGATATTTAGTTAATGAC 45745 36 100.0 30 .................................... AAGTGAGATTACTTTCTGAACACAACAATA 45811 36 100.0 30 .................................... TCACACCTCTACTTAAATTGTTCGGCCACC 45877 36 100.0 30 .................................... GTATGACATGGCTACAAAAGACGGTACAAT 45943 36 100.0 30 .................................... ATGGAACAGTTAATGAAGATAGCATTAAAC 46009 36 100.0 29 .................................... TAAAATTTTGCGATTCGTTCTTTCAGCTT 46074 36 100.0 30 .................................... AAAGGACTAGAGAAATCTTTTGTTCCGTCT 46140 36 100.0 30 .................................... ATCATTTTCAGGTTCTTCATCATCAATATT 46206 36 100.0 31 .................................... CTGGAGACGCACGCTATACTCAATGGATGGA 46273 36 100.0 30 .................................... ATGCGTTGATTACGGGTATTACGGGTGGTG 46339 36 100.0 30 .................................... CTTATGGGAGTTCACAGATTGCAGATGATA 46405 36 100.0 29 .................................... TTTCTAAAAGAAACAACTTTATAACTCCA 46470 36 100.0 30 .................................... GATGATTGACTGGCAACTTATTGAAGTTGG 46536 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 46601 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGGCAAAAATAGTCAGGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTCAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //