Array 1 1156-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLN01000058.1 Legionella pneumophila strain NY11 contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1155 37 100.0 34 ..................................... TAGATATAAAAAGATTAAATCTTCTAGCGCACAT 1084 37 100.0 34 ..................................... TCACTACTCCTGAAGGTTATAATTTTTGCTATAA 1013 37 100.0 36 ..................................... TTCGAATACAATCCTAGTGTCTCTGTGTGAATTAAG 940 37 100.0 34 ..................................... CAGGCACTGGTTCACTAGACACTGTAACATCTAT 869 37 100.0 35 ..................................... CAATAACAAGCGAGCCTTTTGTACTAGAAGGTTTA 797 37 100.0 34 ..................................... CTACCAGTTAATCGTAACTCAATCTCTTTTTCAA 726 37 100.0 34 ..................................... ATAGAATACATAAGTGCAAATTATTAAATGTTAC 655 37 100.0 34 ..................................... TGAATGTAGAAACCAGATGCCACGAATTATTAGA 584 37 100.0 35 ..................................... TTTGTATAAACGTTCTGATATGACTTAGGTAATCT 512 37 100.0 34 ..................................... CTAACCTGATTGCTCAACAAATAATGCTATTGGC 441 37 100.0 34 ..................................... TCACTTTAGGCCAACGCCGATCCTCCGCTTCGAA 370 37 100.0 35 ..................................... CTCACATCTTACCCTCAGGGCGGATATTGTGAATC 298 37 100.0 33 ..................................... ATTAATAATATTTTAGAAGATTGGCACATAATA 228 37 100.0 34 ..................................... TGACGCAAAGGATTTATTAAAAACGCCTTGTAAT 157 37 100.0 31 ..................................... ATTTTACCTTTTAACACATATTGATAGGCGT 89 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 100.0 34 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCC # Right flank : CTCCATAACTGAAACGTCCTTATGCCTCAACATAATGCCAATAATCCCTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1667-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOLN01000105.1 Legionella pneumophila strain NY11 contig_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1666 37 100.0 34 ..................................... ACCAAGTCGAAACAACATACCGAGACCGTGTTGA 1595 37 100.0 35 ..................................... TACATTGTTACGTTCATTTCACTCAGTTTTTCATA 1523 37 100.0 34 ..................................... AGCAATAACCCAAAGTTTCGCGCGCGTGCGCGGG 1452 37 100.0 37 ..................................... TTATAACATCGGGATGGCGGTTTATTGGTTAAGTAAC 1378 37 100.0 34 ..................................... TTCTTTTTTCAGATTTCATTTCCTTTTCCTTGTG 1307 37 100.0 36 ..................................... TTTTTATCGTAAGCTTGATTAACTAGACATCTACTA 1234 37 100.0 33 ..................................... GTTTTAATTTAATCATTACTGCTTCCTTATTAA 1164 37 100.0 37 ..................................... TAAGATATTGGTCGATTGTTTGCAAGACGTCATCAAA 1090 37 100.0 34 ..................................... CTAAATCAGCAGTCATCAAAACCCATATGATTGT 1019 37 100.0 31 ..................................... TTCTCAGAATGGGAACGTTACACATCATATT 951 37 100.0 34 ..................................... TTAAGTATACGTTTCTTTGGGCTATTAGTTCTAA 880 37 100.0 36 ..................................... TTCTCATATTTTAAAACAATAGAGTAATTCATTTTA 807 37 100.0 35 ..................................... AATCTTAATTTATGCGCCTTACCTTCTGCTTCATC 735 37 100.0 36 ..................................... TATACTTAGACAATATCATCATTTCCTATGTTTCGA 662 37 100.0 36 ..................................... GCTATTCCAGATAGGTAGTTGTTTAGAGCATTTTGT 589 37 100.0 35 ..................................... TTCGATACTCCTTAGCGGTACTTGCTAAAGTAGTT 517 37 100.0 35 ..................................... AAATAATTCTTGTGACTCACGTGCCGCCATTTGAA 445 37 100.0 36 ..................................... TAGGAATTGATTGGGGTAACGCCATCGCCATAGAAG 372 37 100.0 33 ..................................... TTACTTCATGACCCGGACATTTTACTAAAAAAT 302 37 97.3 34 T.................................... TCCTATACCTTGTCACAATTTCCTCATATGGCTC 231 37 100.0 36 ..................................... CATAATTGGGAATTGGTGTGAAATGCTCACCGTCCG 158 37 100.0 38 ..................................... TTAATTGCGCCAGAAACAGCACCATTTATGGTTACAGC 83 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.3 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTAAAAATCCAACCACTGAAACCCTGAAAACCCGCCACAACCCGCGCCAGACTTGA # Right flank : TACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //