Array 1 88301-90220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSB01000002.1 Salmonella enterica strain CVM 43810 43810_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88301 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88362 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88423 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88484 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88545 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88606 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88667 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88728 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88789 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88850 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88911 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88972 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89033 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89094 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 89155 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 89216 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89277 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89338 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89399 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89460 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89521 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89582 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89643 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89705 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89766 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89827 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89888 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89949 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 90010 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90071 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90132 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90193 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107649-106356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSB01000021.1 Salmonella enterica strain CVM 43810 43810_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107648 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107587 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107526 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107465 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107404 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107343 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107282 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107221 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107160 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107099 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107037 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106934 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106873 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106812 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106751 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106690 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106629 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106568 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106507 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106446 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106385 29 96.6 0 A............................ | A [106358] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGCGTTGCGGATTATCGTTAAGACTGAAGGAAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //