Array 1 29812-27969 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDG01000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy13 ODE_190_length_52186_cov_15.551949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29811 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29750 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29689 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29628 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29567 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29506 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29445 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29383 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29322 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29261 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29200 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29139 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29078 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29017 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 28956 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28895 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28834 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28773 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28712 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28650 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28547 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28486 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28425 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28364 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28303 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28242 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28181 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28120 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28059 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27998 29 96.6 0 A............................ | A [27971] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46886-45943 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIDG01000156.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy13 ODE_190_length_52186_cov_15.551949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46885 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 46824 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 46763 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 46702 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 46641 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 46580 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 46519 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 46458 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 46397 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 46336 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46275 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46214 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46153 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46092 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46031 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 45970 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //