Array 1 1-327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSA010000004.1 Pectobacterium carotovorum strain CFBP8734 Pectobacterium_carotovorum_CFBP8734_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 22 72.4 32 -------......C............... CAGGCTCGCGGCCAGCTCCGGCACGTTGGTGC 55 29 93.1 32 G.........T.................. TAATCAAAGAGACGCCGGGCAGTCGGAGAAAG 116 29 100.0 32 ............................. CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 177 29 82.8 30 GA..........TT.............A. GCCATGTTCGGACACGTCGAAACCGACACT 238 29 89.7 32 TA...........C............... AGATCATTGCAAACAAAGAGGAACCGTTCAAA 299 29 86.2 0 G............C..T...........C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 87.4 32 ATGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : | # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1191-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSA010000004.1 Pectobacterium carotovorum strain CFBP8734 Pectobacterium_carotovorum_CFBP8734_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1191 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 1252 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 1313 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 1374 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 1436 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 1497 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 1558 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 1619 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 1680 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATGGTTTTGCTGTGCCTTCAGGGATAAACCGTGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTAGGTCAGACGACACGATATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGACGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //