Array 1 12299-13120 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHL01000112.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2098 NODE_112_length_13176_cov_1.35411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12299 29 100.0 32 ............................. AAACATCCGATCAAATACTGCGTTCGTTTGAG 12360 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 12421 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 12482 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 12543 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 12604 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 12665 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 12726 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 12787 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 12848 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 12909 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 12970 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 13031 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 13092 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTGGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4758-4485 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHL01000295.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2098 NODE_295_length_4766_cov_1.16435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4757 29 93.1 32 ......................C....A. CAAAATTAATGTCCAGGACCTTATTAAGTTAC 4696 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 4635 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4574 29 93.1 32 ............CT............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 4513 29 86.2 0 ........................GC.GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : ATCGGCAC # Right flank : TGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14862-15683 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHL01000087.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2098 NODE_87_length_15711_cov_1.31464, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14862 29 100.0 32 ............................. GCTATGTAGCTAACCTATTGATTTTATAAGAA 14923 29 100.0 32 ............................. TGGCGCAGCAACCAGATCCCGCTAACGAACCC 14984 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 15045 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 15106 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 15167 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 15228 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 15289 29 100.0 32 ............................. CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 15350 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 15411 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 15472 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 15533 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 15594 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 15655 29 93.1 0 ..G.........T................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCGGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : CAAAATTAATGTCCAGGACCTTATTAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //