Array 1 511830-513709 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 511830 25 100.0 44 ......................... ATCATATGATCTAACCATAAGACCGAGAGCCTGCCCAGCAGGCT 511899 25 100.0 46 ......................... AGCGACACAGTCACAGCTGTGGTGCCGCCGTTGCTCACGGAGACCT 511970 25 100.0 44 ......................... CTGTAGCTTCTCCCACTCTGCTGCGAGTATATGTCTTACAGTAG 512039 25 100.0 43 ......................... AATTGCCCGTCCACCTCCTGCACCCTGTCAAGCCACGCGGTGA 512107 25 100.0 47 ......................... TGCTGTCCTAGTGGTTGAAGTACAGCGAGGAACAGCTGCGCCACTAT 512179 25 100.0 44 ......................... AACGTCGATGCCGACCTTAGCGGCCGCCGTCGCTAGACTTGCCA 512248 25 100.0 42 ......................... GTATTTGAACGCCCAGGACGCCTTATACGCTACAATCAACGG 512315 25 100.0 45 ......................... ATTGCCTCCTGCAAGATCACGGCCTCGGCCTCCTCGTCTTCGGCT 512385 25 100.0 43 ......................... GAGAGTATGTTGCGCTTGGCGTACTCAAGCGCATACTCGGCGA 512453 25 100.0 41 ......................... TCAGACAGAAGCTCAAGGAGCTCCCCGCCGACGACGTATTT 512519 25 100.0 47 ......................... ATCTGCCTCAATGAATTCTCTTTCAGTGAGCTCTACGTCGTACATGC 512591 25 100.0 44 ......................... GCATGGCGCCTCTCCCGCGCAGACTTATAAGTCTGCGCTGTGGG 512660 25 100.0 48 ......................... CAATCGATTTTGGACAGCACATTGACAGGTGGCACATTAAGACGGCTT 512733 25 100.0 44 ......................... CAAATACAAAAGCTCAAAGTTGACGAGCAAACAGAGGTAATCAA 512802 25 100.0 42 ......................... TTCGTCGACGGTCCGCGCGTCTTCACGCTCTTGGAGCCCGAG 512869 25 100.0 43 ......................... TATAGCATGTTAAAGGGCGCCGTTCCAGAGGAGGTGTACAAAG 512937 25 100.0 45 ......................... CCCTAATGACCTTTTTGGCCTTTTCGGTTACGTTCAAAGAGTAAC 513007 25 100.0 45 ......................... TGGCTAGGAAGTCGCATACGCCGTATGCGGCGCTCACTGTGTAGT 513077 25 100.0 43 ......................... TACACCTTCCTCTTCAACGTCGCCCTCGGCCTCATCCCCCTCG 513145 25 100.0 46 ......................... AGCCATAAGCCTGCCAAATGGCGGATAAGAAGCACTGATCCTATTT 513216 25 100.0 39 ......................... GTGCGGTACTTTATATCCGCGGGCGCACAGCTCCCGTGC 513280 25 100.0 40 ......................... TAAAACAGGGGGAGCTACGCCCCCTGCGCTGTTTTAAAAC 513345 25 100.0 46 ......................... CTGCTTCGACAGGAGCTCCTCGGCGATTTCGGGCGACACGGGCACC 513416 25 100.0 43 ......................... ATTATGCTCTCCTTCACCTCGTTTACAACCGACTTGACTATGG 513484 25 100.0 42 ......................... CTTATGACTTCTCTGTCCGCAACATCGAAGATTCGAGCCTTT 513551 25 100.0 44 ......................... GTACTGAGGCGCCGTGGGCGGCGCCTTGACGGCGATGTGGCCCG 513620 25 96.0 39 ....................A.... CTATATCGTAATATTCGAATTGGGCTTTCGTCTCTTTTT T [513634] 513685 25 84.0 0 .................CAT....T | ========== ====== ====== ====== ========================= ================================================ ================== 28 25 99.3 44 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : AGGCCTTTTTGAGGGCGTCGACGAGGGCAGCCACGAGCTGCCTAACGGGGAGGGGCCTTGGGACGAGCCGCCTAACCCTCACAGCCACCCCCAGCAGGTCGTCCACAGAGCCCAGGTAGACAGTGTCACGAGGGCGCCAACTACGCTTCAGATACAGCCGACGGCCCAAAAGCCACAGATAGCCAACGAGAGGGCCAACTCTCACACGGCCGAAATAGAGATACATGCCGATTACAACACCACCCCATTAAAACATTCCAATATATGTCAGTAAAGGATGCAATCGACATTTGGAAAACGCACTTAGGATAACAGGCGAAGAACGGCGCTGGGTTCTTCCTTCGGCTAGGCGTAGTTATGATCGTAAAGGCGAAGAATGGCGCACGCCGTCTCTCAGACAGGAGAATGTGTGAATGTAAAGGGCGGTGGGAAAGCGACCCCCGAGCCAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCGAAAATACAAGCC # Right flank : TTGAGGCCTATAGAAGTCGCGATCTACTGCAATGATTATATCGGGGGGCTGTAGATTGGTTGTGGATATTGCGTTGAGGTTATGTTGTTAGCTTGTCCATTAGTTGTATTATAAGTGGAAAGCCTTTTTGATGTTTCAGGGTTTGTTTTTCTGGTCTTTGCAGAGGACGCTTCCGTAGCCTCTCTCTTTGTGTAACCCGACGTTGGTCGCCGCGGTTTTTAGCTTGAGGGCGGTTCCCGGCGGTAGCGCTTGGTATACGGCGCGTCTCCTGCCCTCGGCCATGTTGTAGCCCAGCCCGACGTACGTCGACTTGACCTTGGGGCCCTTTTCGCCGCAGACTCCGTACACTTCCTCGACCTCCTCCAGGCCCTTGGCCCCTCCAACCTCCGCCGTGGGGCCCTCTGAGTAAAACAGCAGGGGGGACAGGAGGACGCCCTCGCTACACTGCTTGGGCCCGCCGGGGTCTTGGTCCACCTCGACTAGGGCCGCTCTGCCCTCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 526739-526375 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 526738 25 100.0 43 ......................... GGAATAAAGTCTCTCTTCAAAGCGCATTTGTTGCACTTCTTAT 526670 25 100.0 45 ......................... ACGCTTGCGAAGTTCTTAGCGTGGGCCCGGTGCCGCACTCGCGGC 526600 25 100.0 42 ......................... TATTCGCCGTCCCGACTCGGCGTTAACATGAGGATCCCGCTC 526533 25 100.0 44 ......................... AATATTATGTCTAGCAGAAGATTCCTTATTGCGCTGGACGCTTT 526464 25 100.0 40 ......................... TCTATTAACTCATATATGGCTTGCCTGATGATCTCTCCAC 526399 25 92.0 0 ...........G........A.... | ========== ====== ====== ====== ========================= ============================================= ================== 6 25 98.7 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : GGCCTTTTTGAGGGCGTCGACGAGGGCAGCCACGAGGTGCCTAACGGGGAGGGGCCTTGGGACGAGCCGCCTAACCCTCACAGCCACCCCCAGCAGGTCGTCCACAGAGCCGAGGTAGACGGTATCACGAGGACGCCACCCCACCCTCAGATACAGCCGACGGCCCAAAAGCCAGAGATAGCCAACGAGAGGGCCAACTCTCACACGGCCAAAGTAGAGATACATGCCTACGATATCCCACAAGCATTAAAACATTACTCTATATGTCAGTAAAGGATGTAATATACTTTAGACAAGGGTTTAGAAGGCCAAACGCGAAGAATGGCGCTGGGTGGCCGCCTTCTCTAGGGCGCGTGTATGATGGTAAAGGCGAAGAATGGCGTACGCCTACACCCAGACAGGAGAATGTGTGAATGTAAAGAGGGGCTGGAAAGCGACCGCCGAACCAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCTAAAAACACAAGCC # Right flank : ATGATCGATATCTAACTCGGCTTGGGGGTTTTAGGGTTTTTTGAGTAGGCCTTCGCGTTCTAGCTTTTTCAGTGCTAGGTATGTGGCGCCTGTCCCGGAGAGCTTTGGTATGTAGTAGCAGTGGCCTTGGCCTCCCCTCTCTTCTAGGGCCTTCCTGAGCGATAGGTAGCTTATGTATGGGTTGTCTCTGCTGACTAAGGCGCGTCTTACTGCCTTGCCGTCGCCGAAGGCCCTGTATATGTCTAGGGCGAACTTCACCTGTCTGTAGAAGTTGGGGGTGTACGCCACCAGGTACTCGTCGGCTGGGATCGCGCCGAACAGATACGGGGAGAACGTCTCGGTGGCCACCAGCACCAGGCAACCGTCTAGCTTAAACCCCTTCCTCTTGAGGTCTTCACAGCTGTCGACGTCGGGGTAGCGGCTTAGGCTCTTGCATGCCTCGTCGTACGCCCCCAAAGAACCACCTGCACGTGTTTCCGGCACCCCCCTCTTGAAGCCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 530828-531454 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 530828 25 100.0 41 ......................... CGGTTTTCTCACTACACGTCGGCCTTCGCCACTGTCGAGAG 530894 25 100.0 42 ......................... ACAGCCCAGGCCGCCCTCACGCCGCTGTGCTTCCGCGCCAGG 530961 25 100.0 47 ......................... ATGCCAGTGGGGAGGAGCTCCAGCACCAGGCCGTTGCGCACAGACGC 531033 25 100.0 42 ......................... ACAGTATCGGGAATCCCAGCGCCATCGATTGTCTTCACAATC 531100 25 100.0 40 ......................... TGGCTATCGCGTCCATAACCGCACGCCAGTCCTCGTCGCA 531165 25 100.0 42 ......................... AATACGTCCTCGGCCTTGCCGGTGTGCATAAGCCGCTCGGCA 531232 25 100.0 46 ......................... CGGTGGAGGTTACGCGCCACGCCGTCGTGGTAGTGATGCAGTAGAG 531303 25 100.0 39 ......................... AGAATATTTCTTCTCGACGTAGGCTCTCAGCACGGCGGT 531367 25 100.0 38 ......................... AGTCTTGCACCGCCCAAGAATTCTCCGGTCTCAGCGGA 531430 24 96.0 0 ...................-..... | G [531453] ========== ====== ====== ====== ========================= =============================================== ================== 10 25 99.6 42 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : CCTTGGCGACCCTCCGCAGGTACAGGTCACGCCTAGATTCACAAACTCCGCCGACGATTTCAGAAACCGAAAGCCTCACCCCAAGCGGCGGAGGCGCCACAGGAGGCTCCCCCCATCTCCAACCCCTCAACTCCTCCCCAACCTCAACCCTAAGCCCCCTCACAAGTCTAAACTCCCTAAACATACCCACCCCAACATGTATCTTTTAATGCATTCACATATATGTATGTAAAGAGGACGAAAACAGAAATATATGAACATAAAACAGAAACTCAAAATTAGTAAAACGCCGACAGAAGAGACAGAAACGCACACGCGAAGAATGGCGCTGGGTTGCGCCTTCTCTAAGGCGTGTGTATGATGGTAAAGGCGAAGAATGGCGTACGCCTACACCCAGACAGGAGAATGTGTGAATGTAAAGAGGGGCTGGAAAGCGACCGCCGAACCAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCTGAAAATACAAGCC # Right flank : CTTTCCATTCTCTTTGTGTTTATGTTTATATTTCTGCTTTTTATTTTGCCTGTGGATATATATTTGGTGGTTATGTGCGGCGTTGGATGTATTTTAGGAGTGTTTTTCCTGCTTCTGTGAGTTTGTCGTTGTTTAGGAGTCCGTGTTTTGTGAATTCTTTTAGGATTTTTTTGTCGTATCGTCCGAGGTCTTCTAGGGGGCCTTCGGCCAGCTCTTCTAGGATTCTTCTTCTGGCGTTTGCGTTGGAGCGTGTGAGTTCGTTGACGTAGAGTATTGGCATTAGGTCTATCTGGACTATCCTCTCGGCGTGTTCTGCCATGGTGTAGACCGCCTCTATTTTGGTGTTCCACAGTCTGACTGCCAGCAACGCGGCGGTGTAGAGGCAGAGGGAGAGGGCCCTCACCCCTCCGCCTATGTCGAGACAGTACTCGCTGCCTCTTTCGCTGAACAGCTCGGCGGCGTCGCCGACGCACTTCCAGAAGTCCTCGGGGTTTAGGGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 849844-851759 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 849844 25 100.0 43 ......................... TGAACGGCGTGACTGTTGCTGTGTCGCCACTCCACTCAAACAT 849912 25 100.0 42 ......................... AAAGTCGAGACGCAAGGTGGGGGGTTGGTATGAGGTGCTACG 849979 25 100.0 40 ......................... TGGACGGTCTCACTACATGGATTTACTGAGCGCCAGACGT 850044 25 100.0 40 ......................... GTGATAAATGTGTTTAACGCATCTGTTTCACATTCCGCAT 850109 25 100.0 41 ......................... GAATATACTTGATCTGTGTCCTTGTGATCTTCTCGTCGAAG 850175 25 96.0 46 T........................ GCTCCGCACTGTATACACACGACGCCGTCGGCGACGGTCACGAGCG 850246 25 100.0 43 ......................... CATCTGCATGACCATATACCTCATCAGCCCCTGCATCATGGTT 850314 25 100.0 44 ......................... GTTACGTGGTGGTATGGCAGGAGTGTTAAGATTATGGTGGCGCC 850383 25 100.0 45 ......................... ATGCTCGGCATACAATCGCTGGCCCCCTCCCCGCCCTAAAGGGCG 850453 25 96.0 44 .T....................... ATGAACAAGGAAGTCGATGTCGAGGTGGTGCCTGAGGAACCCAG 850522 25 100.0 43 ......................... CCTAGAACACCAAAAGGCGCAGGCCATGAGCCCCAACACTATG 850590 25 100.0 40 ......................... AGCTTCTTCCTACGCTCCTCTGCGCTACCCTCAGAAGTCA 850655 25 100.0 44 ......................... GCGTAGTTTATGTGGATGAGACATATACGTCAGCTACATGTCCA 850724 25 100.0 42 ......................... TCTACATCTGTCCAGAACCTGTATGCCTCGTTGGCAACATAT 850791 25 100.0 45 ......................... CCACCTCCAGTTGCCACCTCAACCACGGCACTGCCTATCTTCCGC 850861 25 100.0 46 ......................... ACGGTACCAGACGCAGATATGCCGCTCTGAGATGGCGATATGTTGC 850932 25 100.0 36 ......................... GAAGCCGGCGTCGGGGGCCGCGTCGCCCGGCCCGCG 850993 25 100.0 44 ......................... AGCCAACTGGCCCTTGACACGGCCCCCGGGCCGGGGGTTGACAA 851062 25 100.0 43 ......................... TTCGAAGTTGCATCCGCTCGACCCCTCCCTCTCCTTCCGCCCT 851130 25 100.0 40 ......................... CCTCTACAGAGACATCACATGTCAATAAACCCGCGCCTGC 851195 25 100.0 42 ......................... GCCCCCGCTGTAGCTGAAACATACTTTGACGCGTTGCTTTCC 851262 25 100.0 35 ......................... ATTATGTCTGAAACTGGTCTTGCCGTTGGCGTGCT 851322 25 100.0 42 ......................... CAGGAGAGAAGCCGCAGATGGCATAACAAATTCGCCATAATC 851389 25 100.0 46 ......................... GAACGAGAAAGGCGCCGCGGGGGCGGCGTGGTTGGACGAGCTAGTC 851460 25 100.0 43 ......................... ATATGGAGTATCCAGAAATGAAGCCGCAAGCCATTTCAGTTCT 851528 25 100.0 45 ......................... CCACTTGCCATATCGTTGTAGCCGAGCCGCACCGCGTACGGAGAC 851598 25 100.0 45 ......................... GCTAGTCGGCGTGCCGGTGGCGATTATGACCCTCGCCATGCCGCC 851668 25 100.0 42 ......................... CGCTGTCTCTACCTCTCTCGTGCGCATGGTCATCGGCAACGT 851735 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 29 25 99.7 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : GGCCTTTTTGAGGGCGTCGACGAGGGCAGCCACGAGGTGCCTAACGGGGAGGGGCCTTGGGACGAGCCACCTAACCCTCACAGCCACCCCCAGCAGGTCGTCCACAGAGCCGAGGTAGACGGTATCACGAGGACGCCACCCCACCCTCAGATACAGCCGACGGCCCAAAAGCCAGAGATAGCCAACGAGAGGGCCAACTCTCACACGGCCAAAGTAGAGATACATGCCTACGATATCCCACAAGCATTAAAACATTACTCTATATGTCAGTAAAGGATGTAATATACTTTAGACAAGGGTTTAGAAGGCCAAACGCGAAGAATGGCGCTGGGTGGCCGCCTTCTCTAGGGCGCGTGTATGATGGTAAAGGCGAAGAATGGCGTACGCCGGAGCTCAGACAGAGGAATATATGAATGTAAAGGGCGGTGGAAAAGCGACCCCCGAACCAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCTGAAAATACAAGCC # Right flank : CCCGTATTGCGTATGAGGTGCGCTTCAAGGAGTTTTTCCCTAAACGCCCGGAAATCTAAAGTGTGGGCTTGTTGGTGTGGTGGGGGTTGGCGGGTTGATGTTTTTATGTGCCAGTGGTTTTTTCTGGTATGGATTCTCGGTTGGTGGATGTGTTGATGGAGGTTCAGTACGATTTTCCTCTGGTGGAGCGGCCTTTTGCTGTGGTGGGTGAGAGGGTTGGGCTTGGGGAGGGGGAGGTGGTTGAGGTTCTGCGGGGGGCTGTGAGGGCTGGGGTGCTTAAGAGGATTGGGGCGATTTTGAACTACAGGGCGAGGGGGATGGAGGCGGCTTTGGTGGGGATGGCTGTGCCGGAGGACGTCGTCGAGGTGGTGGCGGCGGAGGTGAATAGGGACCCGTACGTGAGCCACAACTTCCAGCGGGATTTCAAGCCTTACAACCTGTGGTTTGTGACTAAGGCGCGTAGTAGGGAGGAGCTGGAGGGGAAGGTGGCGGCTGTGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 5 856227-857471 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================================== ================== 856227 24 100.0 48 ........................ CGATCAGCTTGACGATCGTGGAGTGTATTACCGACTTCTGCTCCTCGG 856299 24 100.0 45 ........................ CGTAGTGGTAATCTCTAATCTCTCTAATGATGTCCTCATTCTCCA 856368 24 100.0 42 ........................ CTTCATGACCGCATTAAATATATCGGGGTCTTGCATTGCTAC 856434 24 100.0 41 ........................ CCTCGAGGAAGGCGTGGGGATCCCTGGCCAGCAGCTCAGCC 856499 24 100.0 42 ........................ TTTAACCGCAGAAACTTGTCGATAACTGAAAAAACGGGGTTG 856565 24 100.0 45 ........................ TTGTACTCTTATAGAAACGTATTGTGGCCACCTTACGGCGGAGTG 856634 24 100.0 44 ........................ CAGTCTCCGCGGATGCTTGTGCATCGTTCGGCGCCGACAACTCA 856702 24 100.0 41 ........................ ATCTTCACAGCGTAGTACACCTGCGTGTGGCTGAGGGAGAG 856767 24 100.0 38 ........................ CGTCTAGGACGAGGGGCACTATCATTATGCGCCTGTCC 856829 24 100.0 43 ........................ CTCAGCTTGTAGACGTTCTCCATGTATTCATCGATATAGTACA 856896 24 100.0 46 ........................ CTCCACCAACGTCCTTATCTCTTTTAGGCATATTTCCATGTATTGG 856966 24 87.5 48 .........AAA............ CAAATACATGTAATACGTTGCAGTATTCTTATACAGCCTACTCTTTAC 857038 24 87.5 43 .........AAA............ AATTGCCCCACGACTTGGGGGAGAGAAACGGCGGCGTGGGGGT 857105 24 87.5 45 .........AGA............ AGGAGAGCGGCGTCGACGACGTCCGCCCTTCCGGGGAACTTGGGA 857174 24 87.5 54 .........AAA............ ATAACATCCATAAGGTTTATTGGTCGTGCGAATGGCACCTCTTCATTGGGCAGA 857252 24 87.5 41 .........AGA............ TCCACCACAGAGCCCGTAATTGTATACCACCGCGAATACCT 857317 24 87.5 43 .........AGA............ ATCTGTATATGCGCCAACCTGTCAATAAGCGGGTCTGCGTTTT 857384 23 91.7 40 ..........-A............ TGCACCGGAATGCACCGGAAAACCTACACTGTGCCCCTGA G [857391] 857448 24 95.8 0 ......T................. | ========== ====== ====== ====== ======================== ====================================================== ================== 19 24 95.4 44 GAATCTCAAGTTGAGGATTGAAAG # Left flank : CCCCAAAGCCGCCCTACTAGACGAGCCCACAGCCTACCTAGACGCAGACAAGAGAAAAACCCTCATGGACTACCTACGGCAGTACTCAAACAAAGCCCTCGTCCTCCTGACAACACACTACCCAGGAGACATCCCACCAGACACCCCCCACTACGAACTCAGAGACGGCGCCATAAAAACCACCAAACCTACATACCCTATATAGACAGCGGCGTTTATAAATCGTCGTGCAGCAACCCCTTTTTTTTTGTAAAATCGTTCTACTCCTCCGTCGCTGTGTGTTTGTCAAGCGGAGATCCAGTTTAAAAAACGGCGGGCAGAACAACGGCGGACGGCGCCGCCGACCTCCAGCCACACGCTTTCAACTGCGGGACGCACGGGGTCAGCTCTAGAAAAACAAGCAACCCAGAAAGAGCAGTCTCAAGAACACCCCGAAATCAACACAAAACCCCACAGAGAAAAACTTAAAAACCAACAAAAACCAAAACCCAGAAGACCCA # Right flank : GCCTCGCGGGATTTTAAGGGGGGTTGGTTGTTTAGGTGGGTTTTGTGGTTTTGAGGTGGTTGTGTATGAGGTCGGCTAGTAGTTCGGCGCATTTTATGCAGGTTTGTGCGTCGTTGGAGAAGGCTTCGCGTTCTAGGCATTGGGCGCATTTTTCTGCGTCTGGTGGGGGGTTTCCGCCGAAGATTTCTCTGACTAGGGCTGGGAGGCGTTTTATGCTTTCCGCCTGGCCGTAGGGGTGGTACCCCAGGGCGCCTTTGGCCAGCGCCTCGGCTGAGACGTATGCGTTGTAGCAGGCGGCCGTGGCGTCTCCCTCCTCTAGGGCGGCTAGGGCCTGGTGGAGGTGTCTGAAGTGCCTCTCCAGCCACTTGGGGTGCATGTGCCTCACCCGTCAGTGGTTTATGTCTTTTTCATGGCTTGTGCGACGAGTCTGGCCGCTCTCCTGCCGACCTCGGTGGGGTCCTCTCCGTAGACCTTTACCAGGTGTTTCCGGCCGCCTTGGG # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGTTGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 6 883097-885730 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 883097 24 95.8 42 .......................T GCCCTTGGCCAGGTGGACGGCCCAACCCAAGACGAGTAGTGG 883163 24 95.8 45 .......................T GACGGCGGGGTCAACCGCCCGGGGATGTAGATTAGACGTGGCGAT 883232 24 100.0 42 ........................ CGAAACGGGGCGGCACTCGGCCGAGGACATACTCCGCGGAGT 883298 24 100.0 44 ........................ CCTCACAATTTCGGCCGCCTCTATACTTACACGCACACTTAACT 883366 24 100.0 45 ........................ GTATTGGGTTATATATGGGCCGTCAAGTTTGGTGCTGTATTTGGT 883435 24 100.0 39 ........................ ACGCCGGCCTGCCCGGGACGTATGCAATAGACTACTGGC 883498 24 100.0 45 ........................ CTTGGACGCGCAGAGGATCTACAGAAAGCTCCTCGAGTATGTCGA 883567 24 100.0 47 ........................ ATCATTCCCGTACACAAGGTCGGACAGCTTCAGTTGCTGCCCACCGC 883638 24 100.0 39 ........................ CTGTTTTCACAGCTGTGATTTCCGGCGTCCGAAGGGGGG 883701 24 100.0 46 ........................ TTGTAGTATATCGTGCCGGCCGACAGGCTGATTTGGGGCAGGGCCA 883771 24 100.0 44 ........................ ATTAGGGCATCGCCAACATACTTGAACACCTCGCGGTATTTAGT 883839 24 100.0 44 ........................ GTAGAATACTACGTCGGTCGCGGGAGCTGTCGCTACGTTGATGG 883907 24 100.0 42 ........................ TGTAGTCGGTGTAGGAGCCGCATGCGGTGCCCTGTATGACAT 883973 24 100.0 45 ........................ TTTATTGTCTCCAGCCACGCGGCGTCTCTGTCACGCGTATTGACG 884042 24 100.0 47 ........................ TCTATCGTTATGCCGTTTGCGTTATTGTAGTACAACAGAACGCCGGG 884113 24 100.0 42 ........................ CGCCACACGACGCTTCAAGAGCTACTGAGAGCGCTCTACGCC 884179 24 100.0 39 ........................ ATCCTCTGGCCAGGGATAAGCAGAAAAAGGGGGATTACA 884242 24 100.0 41 ........................ CTTCGCGATCAGCTCCGCTATCGCCATTCTTATGATCTCTC 884307 24 100.0 44 ........................ AAACACGAAGAAAAAATACGAGGTCAACGAAAACGGTGAAATAG 884375 24 100.0 38 ........................ CGTCGCCCAGCTTGAACTTTCTGTTGCAGACGTCCAAC 884437 24 100.0 45 ........................ CTAACACTGACAGTGCCTGTCGACAGATCGCGCCTGATTGCGACA 884506 24 100.0 43 ........................ GTTTAGACTGTAGAATTCCTTTCCGCATAGCTGGCATTGCATG 884573 24 100.0 35 ........................ GCCAGTGAAGGTAATCTATTTGACATCAGATGGAC 884632 24 100.0 42 ........................ TCGGACATTGTGGCAATGTGGGTTCGTGGTATCATAAGCGAA 884698 24 100.0 46 ........................ CGACAAGGTCGCGTTGGCGGTATCACTATTTAAACCCACGCAACAG 884768 24 100.0 42 ........................ TTATATTGCGCCAGTTACTATTGGCGACAACTCTCCTCAACA 884834 24 100.0 45 ........................ CTATCTTGGGTTTTACACGTGCGCCCGCGTTTGGATCCAATATGT 884903 24 100.0 39 ........................ TCTTGGTACACGGCGGTGGCAGGCAGTACTACGCCTTCA 884966 24 100.0 42 ........................ ATGATGGTCTCGCTCTTGGTGTACAGCCATATGACCAAGCCG 885032 24 100.0 41 ........................ GTGGCGAGCTCTCTGAGAAGTAGAACGCGGAGGTGGGTCAC 885097 24 100.0 42 ........................ ACGTCGACGTATGCAAGCAGGTTGTAACCGCCTAACGAATCA 885163 24 100.0 45 ........................ CTAAACTTAAACGTGCTTGAGATCGTTGAGGTATGAGCTCGTGGA 885232 24 100.0 40 ........................ TAGTAGACGTGTGTCGCAATTAGGCTCTGCGTCGCGTTTA 885296 24 100.0 45 ........................ AGGAGGGATACAGACAGCTCATCCGGTACGTCGCAGAGAGGGAGG 885365 24 100.0 43 ........................ GCCATACTCCGTGGCCTGCATAGCCGTGAGGAGGGAGCTGGCG 885432 24 100.0 44 ........................ CATGATTGAGCGCAGCGAGAAGCTGTCCGACACCGCCGCCGCCA 885500 24 100.0 45 ........................ CGCCTTGCTGAGGTCGTACCAGTGCATAAGGCGCTCTGCGAGGCC 885569 24 100.0 44 ........................ GTCGTCTACCCGCCGCCCGACAAATACATCGCCGTGATCGGCAC 885637 24 100.0 46 ........................ TTCTACGACTTTGCGGACAAGCAGACGGTGTATGAATACATGGAGA 885707 24 95.8 0 .......................A | ========== ====== ====== ====== ======================== =============================================== ================== 40 24 99.7 43 GATTCTCAGATAGAGATTTGAAGG # Left flank : CACACACAACCCCCCAACCACCAAAGGCGATGTTAAAGCGCAACACCACCGGCCTAGAACACCCCCCAACACCCGCAAAAACCCAGACCCAACAGCGCCAACCACGCCAACACACAAAACCACAACACACCACAACTAGCGCCATATCCCCTCTGCACTGAGTTCCAAGACCAGAGACCTAGATAACTGAAAGGAGATCTATATAGACAACGGCGTTTAAAAATCGTCGTGCAACGAGCCCTTTCTTTTTGTAAAATCGTTCTACTCCTCCGCCGTTATACCTTTGTAAAGCGGAGATCCAATTTAAAAAACGGCGGACAGAAGTACGGCGGACGGCGACGCCGACAGTCAAACATCCGCTTTCAACTACCCCCAGCAGAAGCCAGCCGTGGGAAACAGACAAACCCACCACTTAGCCAACACAAGAACACGCCGAAATAAACACAAAACCCACTAGAGAAAAACTTAAAAACCAACAAAAACAAAACCCAGAGGACCCG # Right flank : ATTCGTCTTGGTGTGTGAACGCTGTGTGTTTGGGTATGGTGTTGGACGTTGGTAATGTTTAAATAGTTGGTTTGATGTCTTTATATGGCTGGGAGGGGTGATAAGAGGGTGTCTATGGAGCCGTTGATTTATGTCTTGTCGTGTCTGGTGCGTGAGAAGTACTATGGCCCTCTTGACCGCCTTGCCCGCGTGGAGGATAGCGACGAGTTTTACGTCACGATGGCTATGGAGGCTGTCTACGACGCTTTGAGGTACTTTGGCACGTTGAAGGACTGTGCCCGTCCGGAGGGGTTGGAGGAGGCGGTTCGCGCCTTTGCCGCGTTGGTTAAGAGGAGGCCGGCTGTGGCGAAGGAGGTGGCGTTTAAGGCGCTTGCGAAGGCGGTTGGCGGTGAGCGGCAGGTGGTGAAGGGGCAGGCGTCTGCGGCGAAGTAGCCATGTTCGTCTCGTTCGCCTTCCGGTTCCGGGCGGAGGTCGAGGCCCTCAACATGGTCGAGACTATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTCAGATAGAGATTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 994025-995068 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 994025 25 100.0 40 ......................... GCAACGACGAGCGGGCGCTGTCGACATTCGCACTGAGACA 994090 25 100.0 42 ......................... CTAAAAAACGCACAACCTTCTCGATTCTCTCTTGTCCGCTCA 994157 25 100.0 44 ......................... CAGATGAGATACGCAGACTGTTTCTGCCTGCAGCAACTACCAGG 994226 25 100.0 46 ......................... TGAGTAGCTCTTGAAGCGTCACCCAACGCGGTAGCTGGGATATGCG 994297 25 100.0 39 ......................... GACATATGGAAGATCCGCTGGCCCGAGGCGATAAAGTCG 994361 25 100.0 44 ......................... CCGGCCCCTGAGGGGCCTCTAACTTCGTAAACTCTATTTTTTGA 994430 25 100.0 42 ......................... AAGGTGCGCGGTGAGGACGTACTGCCTCTGGATTCGGAGGTG 994497 25 100.0 46 ......................... CTTGTTGGAGTTGCTCTGGGCTTTGCCGTCGGCGCGTTCTGGCTCA 994568 25 100.0 39 ......................... GAGATACGCGATGGCGTAGAGACTGCGACGTTGTCTCGC T [994585] 994633 25 100.0 42 ......................... ACGCTTCTTGCAAGACGCGTATAGTCGCGTCGCGGTTGTTGA 994700 25 100.0 45 ......................... ACACCGCTTGGGCTCGAGGCTGAGGAGCTCCTTGAGCCGGCCAGG 994770 25 100.0 43 ......................... AGAGACTCGTAGAACAGTAGCCAAGAGTACGCCTTAGACCAAA 994838 25 100.0 43 ......................... TCCCTGGTGTCTGCTAAGACGTCCATTACGGCGCCGCCTTAAC 994906 25 100.0 45 ......................... CCACATGGACTATACATGGATGTGGGGCCTGAAGGAGAGGGAGTA 994976 25 100.0 43 ......................... GGTCTCGCGATCCTGCCCAACACCGCCATGGCGACCATGGCGT 995044 25 96.0 0 .............A........... | ========== ====== ====== ====== ========================= ============================================== ================== 16 25 99.8 43 CCAGAAATCAAAAGATAGTAGAAAC # Left flank : AGGCCTTTTTGAGGGCGTCGACGAGAGCAGCCACGAGTTGCCTAACGGGGAGGGGCCTTGGGACGAGCCTCCTAACCCTCACAGCCACCCCCAACAGGTCGTCCACAGAGCCGAGGTAGACGGTATCACGCGGGCGCCACCCCACCTTCAGATACAGCCGCCTGCCCAAAAGCCAGAGATAGCCAACGAGAGGCCCAACCCTAACACGGCCAAAGTAGAGATACACACCAACCACAACACCCACGCATTAAAACATTCCAATATATGTCAGTAAAGGATACAATATACTTTAGACAAGGGTTTAGAAAGCCGAAGGCGAAGAATGGCGCTGGGTCGCGCCCTCTATGAGGCGGAGTTATGATGGTAGAGGCGAAGAATGGCGCACGCCGTCTCTCAGACAGAGGAATGTGTGAATGTAAAGGGCGGTGGAAAAGCGACCGCCGAGGGAACAAAAAACCACGAAAAAACTTAAAAACCCAAAAGATCCGAAAATACAAGCC # Right flank : CAACTACACGATGATTCATATGTGCTTGACTTACGGTGAGCCGACGAAATTTGTGACTTTTAGAAGTTGGCATGTATAGCTGTATGACTTTATCTTGATTATCAAGTTTCTACTGTGTTTATCGCATGCAGTGGCTTGGTTTTGCATTGCTTCAGCTTTATGTTTTTCATGGCCCTTTCTCAGGCCGGCGTTCGGTTTCCTACCCATCTTTACGTTTATACAATGCTCTTATGCGCTCCTAACATGGTGGATCCCCCCGTGTCGGGGGCGTGGACGGCCTTTGACGGCGTTGGCCGGCTGTCGGAGCTGCCCTCACCTGGCCGCGCCTCTGTAGGGTCTGGTGTGTTGATGGTTGTTCTGGTTCCGTGGTTTGGCGGCTTGTGGGTGGGGGTCTGGTGGGGTGGTTTTGTGGTTGTTTGGGTGTGGCCGTGTGGTTTGGGCTTAAGCTGTGTTTTCTTTTAGTCTTGTGATGATTTGTCGGAGTGCTTGGCTGGTTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 8 1017598-1019142 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1017598 24 100.0 40 ........................ GGAGATGGCGATACTGCGGGCGTTCTGGGGGGCATGCTGA 1017662 24 100.0 43 ........................ CAGCGCCTCCACGGTGTACGAGCTGGGCAGAGTGAGGGTGGTG 1017729 24 100.0 40 ........................ CAACTCCTAAACCACCCCGTTTTTTCTCTCCTTAAGACGT 1017793 24 100.0 44 ........................ CGTCAACTTGATCCATTGTACACTCACGCCCGAAACAGACATTG 1017861 24 100.0 41 ........................ CTTTGGCGCGACAGAGTGGGTTCTGGCGTGACAGTTCCTTG 1017926 24 100.0 44 ........................ ATATTCCGGGCCCAGGGCATCTACGGTGCCCGGTGGGTAGGCTA 1017994 24 100.0 44 ........................ GTTTCGAGTGCCATTCACTGTACGGCTCGAGCTCATATATTTTC 1018062 24 100.0 44 ........................ GTTTCGAGTGCCATTCACTGTACGGCTCGAGCTCATATATTTTC 1018130 24 100.0 45 ........................ TGAACTCGCCTACCTTGACGTAGCAGGTGTTCCACACCACCAGGT 1018199 24 100.0 38 ........................ GGTCATCCCCGTCCACGACGCGTAACCTCCCCATTTTT 1018261 24 100.0 41 ........................ TCGATAGCTTTCTCAGCCGTAGCGGTGTCCATCATGGCGAC 1018326 24 100.0 42 ........................ GGCGGCGGTCTCTGCAACTGTTGCTGTGGCTTAGGCGGAGGT 1018392 24 100.0 42 ........................ TGTCTAGATAGCGCTGTATCATCATGGCCTTGGGATAGTAGA 1018458 24 100.0 44 ........................ CAGCGAGTGTGGCGGCAGGCAGACGCCCAACAGCTCCTCACTCT 1018526 24 100.0 41 ........................ ACTCTCTACTCCTACGTACACATCATCGCCTACACGTCTCA 1018591 24 100.0 41 ........................ TCACTTGACGTCCCTACCGCCATACTCACTTCACGGTTGTA 1018656 24 100.0 41 ........................ CTACTGCCTCGTAGACGTGGAGGAGGGAAGGGCCGTGTGCG 1018721 24 100.0 44 ........................ AATGGGTTGCGACAGCCACCGAAGCTACCGTGCCACATCGACTC 1018789 24 100.0 45 ........................ TATGCAATCTGCTCAGCCAAACTAACGTCGTCCAGCCTCGTAATG 1018858 24 100.0 43 ........................ CGGCCGGCGACGGCGACGGTGAGGTCGCAGGCGCAGTTGCGGG 1018925 24 100.0 43 ........................ GCGGTGACAGGCGAGTAGTTGTATGCGACGTCTAGGGCATCAT 1018992 24 100.0 37 ........................ AGCTGTTGTTGCTGTAGCTGTCTCATTACCTCCTCGC 1019053 24 95.8 42 .........A.............. CACAGCTGTGTACTCGGCGAGCGCCATGTCGACGAGCTACTG 1019119 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================= ================== 24 24 99.8 42 GAATCTCAAGTTGAGGATTGAAAG # Left flank : CGGCGGAATAGCAAGAGGATTCCTCGGCTGGGCCCTATACCGCGCCTACGGAAAGAGAAGAATCACAGACCTCTGGAAAACCATAAGACTAATGGAAACCCTCAACGTAGGCACAGGACGATCCATGGGCCTCGGAGCCGTCAAAGCAACCCCCCTAAAATGCCCCAACCAACAACCCACAGAAAAACCTACATACCCTATATAGATCACGGCGTTTATAAATCGTCGTGCAACAAGCCCTTTCTTTTTGTAAAATCGTTCTACTCCTCCGCCGTTGTACCTTTGTCAAGCGGAGATCCAGTTTAAAAAACGGCGGGCAGAACAACGGCGGACGGCGCCGCCGACCTCCAGCCACACGCTTTCAACTGCGGGACGCACGGGGTTAGCTCTAGAAAAACCAACAACCCAGAAAGAGCAGTCTCAAGAACACGCCGAAATCAACACAAAACCCACCAGAGAAAAACTTAAAAACCAACAAAAACCAAAACCCAGAAACCCCA # Right flank : GATAGGGCAGGTTGCTGTGGAAGAGGGGTTGGTGCCGCGTCGGCGGTGGGGAGTGCGTTGGTATGTATAATAACTTCTGTGTTGTGGGGGGTATGAGGGTTGTTGTTGAGAATTTTGGCGTTATTAGGGAGCTCAATGTGGAGCTTCCTGAGGTTTTTCTGCTTTTTGGGCCGAATGGGGTGGGGAAGACCACGATATATGCCGCGATTACGGCGTTTGGCTATTTGGAGTGGGGGAGGGGGCTGTACCTGGGGAGGCACGTCAGCGCTTGGAGGAGGACGCCTCGGGGTCGTGTAAGCGTGTCTGTGGAGGGCTTGCCGTTTCCTAGGTCGAAGTGCTACGGCGTGCCGTTTCCCCACGACTTGGTGGAGGAGCTTCGGAAGGTTTCTGCGGATCACGCCAACAGGCTGGCCCAGTGCGACTATGGGAGGGTGTCCTACAGCTTTGTTGCTGTGGCTGGCGACGAGCCCCACGTCTTAGACTTCTCGGTCGAGCTGGAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGTTGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 9 1032171-1030559 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1032170 24 100.0 40 ........................ TCTCCCCCGCCTGTCCTACAGCAACTACGGCTTTAAATGT 1032106 24 100.0 40 ........................ GTGGCGGTTGATGACGACGACATTGTGTTGGTGGACATCG 1032042 24 100.0 45 ........................ CACTTGCAACACAGCGGTACCACTGCGGTCATAGACACTAACGAC 1031973 24 100.0 39 ........................ CAGACCACACCCGTATCCACGCCACGGCCGGCCCCGTCC 1031910 24 100.0 41 ........................ ACAATCTCGTAGAGTTCGTCCTCCACCTCCTCCTCGCTAAC 1031845 24 100.0 44 ........................ GCAGTACCACCGCATCTGCGGCCCTAAGCCCGTAGTAGTTCGTC 1031777 24 100.0 46 ........................ CGAGGGCCCTCCTCACCAGGAGCGACTTGTTGCCGACGCCGGTGCG 1031707 24 100.0 43 ........................ CTTCAGACCGAACTTCTCGCCAACCCAAATCAGATCATCCTCA 1031640 24 100.0 43 ........................ GCAAAAAAGTGAATCCAGTCGCTAATCTTACTGTTAGCCACGC 1031573 24 100.0 43 ........................ TCGTACGTCTCCATCACCACCTTGGCGCTGTCGCTACCATGCT 1031506 24 100.0 40 ........................ ACGGATACCAGAACCACGAATCGCGTGGAGCGTGATAGTA 1031442 24 100.0 46 ........................ GTCTGTATACTTGATAGTGGGGTGGTTGATACAGTGGCAGATGCCG 1031372 24 100.0 36 ........................ TCTGGCAACTGCTTCACGACTATACTATCGCCATCT 1031312 24 100.0 46 ........................ GACGTCTCAGATTCTCGAGCTTGTCAACCAACTGCGCAAGCTCCCT 1031242 24 100.0 46 ........................ GGCCCCGGCGCCAGATGCCGCCAGGGCCCCGGCTATTAGTAGGGCC 1031172 24 100.0 45 ........................ ACGGCGGATGTATGTTCTGTAGGCCTGGCTGGCCCTCTGCAGTAA 1031103 24 100.0 44 ........................ TGACCAACCTAGATCGGGCAATAATTGTTAAGGGCCCCATCCAC 1031035 24 100.0 44 ........................ TAATGTAGCACGTCTTGGCACGCTCTACGCACTCCTCATGAGCC 1030967 24 100.0 43 ........................ GAGCCTGGGGGCGGCAGGATCAGTGCTGGCGGGGCGGCCATAC 1030900 24 100.0 41 ........................ TGTATTACAGCACAAATATATGCATATACAGACATCGACGC 1030835 24 100.0 37 ........................ AAGACTCCCCTTGAGCTGGGCGCAGAGAAGCCCCTGT 1030774 24 100.0 39 ........................ TCTCAAACGCATACGCGTTCTTCTGCCAGTAGTACGGAT 1030711 24 100.0 41 ........................ TAGCCCTCCTAACGCCGTTGACATAGACATATCCATCGCCG 1030646 24 100.0 40 ........................ CACCACGGTGCAGTTGCGCGCCCTGGCGTACACGACTAGC 1030582 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 25 24 100.0 42 GAATCTCAAAGAGAGGATTGAAAG # Left flank : CGCAGACACATCCCACGACACCTCCCAATACGGACAATCCACCACACCCCCCTCCCCCACCTCACCCACAACCGGCGGCAGAGACTCAGCCGCCCTATCCCCAAAAACCTCCAAAAGCCGAGCCAACCTAAACACATCCTCCACAACACAAACCAAACCCCCATATAAAAACAACCCACAGACACAACCTACATACCCTATATAGACAGCGGCGTTTATAAATCGTCGTGCAGCAAGCCCTTTCTTTTTGTAAAATCGTTCTACTCCTCCGCCGTTGTACCTTTGTAAAGCGGTGATCCAGTTTAAAAAACGGCGGGCAGAACAACGGCGGACGGCGCCGCCGACCTCCAGCCACACGCTTTCAACTACGGGACGCACAAGGCCAGCTCTAGAAAAACCAACAACCCAGAAAGAGCTATCACAAGAACACCCCGAAATCAACACAAAACCCACCAGAGAAAAACTTAAAAACCACCAAAAACCAAAACCCAGAAGGCCCA # Right flank : GCCCGACTACAGGCCAAACTTTATACTGGGTCTCAAAGCGAGGTTGTTGAACGCCGGTGGCGGCGCTTGTGTTCCAACGTAGGTTGGTCTATTGGAGGGCGGGGGTGTTGAAGGGGGGTTGGGCCGGCGTTGTGTGGGGCTAGATTTTTTCCACTGTTGTTGGCAGGTGGCTGCACCATTTTCTGTACCAGCAGTTTTGGCATTTCGCCGGATTTGGGTTTAGGACCGGCGGCTTTCCCTGGAGTATCTGCTGTAGTCTCGAGACGGCGTAGTTCAACAGCTCTTGTAGGTCTTTGGTGATGTGGATGTGGGCTATGTGGCCGCTCTCGGCGTAGTATATGTAGGCTGTGGTGACGGCTTTTCCGTATCGTTTCTGCACCATGGCGGTGTAGGCGGCGGCTTGTGCCTTGTGGTGTATGGGGATGCGGCGGGGCCTCGCCGCGGCCTTCACCTCGAGGGGGCTTGGCCTTCCGTTGATCCAGAGGACGGCGTCTACCGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAGAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 10 1035988-1038486 **** Predicted by CRISPRDetect 2.4 *** >NC_010525.1 Pyrobaculum neutrophilum V24Sta, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================================== ================== 1035988 24 87.5 42 .........AGA............ TTGTCTCTGTCGCTTGCGCCGTCTCACGCCGTCTTCCCCCCT 1036054 24 87.5 42 .........AGA............ CTCACCGTAGAGAGGCCGGCGTGGTGGGGGGCGCCGGCGCTG 1036120 24 87.5 42 .........AGA............ CTGTCCTCTGCACGGCGCCCTCGAACTTAACGCCGTCTTTCC 1036186 24 100.0 47 ........................ GTAGCATGCTGTCTCAGTTGCTGGCTGAACTGAGTGGCATCTAGCAC 1036257 24 100.0 41 ........................ AGAGTCTCGTACGACACTCTCCTCCCGCAGAGGTCGCACCT 1036322 24 100.0 41 ........................ AGAGTCTCGTACGACACTCTCCTCCCGCAGAGGTCGCACCT 1036387 24 100.0 45 ........................ CGGAAAGTTCTGTCGCACTGTCTGTTGGAAGTAGTCCAACCCACC 1036456 24 100.0 42 ........................ TCGATTCCATCCGTTATGAGCGCTATGACGGCGTTGCGACGC 1036522 24 100.0 42 ........................ CTGTACAGATATCTCGAGTAAGGAATGGGTGTTAGTTCGACT 1036588 24 100.0 44 ........................ CAACGAAGGCGACCAGGTCACCGTTGTGGTGCGCAACGTGAAGT 1036656 24 100.0 44 ........................ GTCTTCTCTTGGATCTGCTTGGCGAGCGCGTCCACAGCTGCGCG 1036724 24 100.0 39 ........................ TCGTGAAGAAGAAGAGCGCAGGAGACGTGAGGAAGAGGA 1036787 24 100.0 45 ........................ ATAAACCAAGTGGCGGCGTTCTGCGTAACCGGCGTCCAGTTGATC 1036856 24 100.0 43 ........................ CAACAGGTCACGTCCTTCCTTGCCGGCCTCACTGACCCCTTCG 1036923 24 100.0 42 ........................ CGAGGACAGCTCTAACGCTACTCGCTGATTCAGAGTAATTAA 1036989 24 100.0 41 ........................ ATTAAGTTCGCGTATCTGCTGAATGAGTACAGGCGCAGACT 1037054 24 100.0 41 ........................ TGTATCTGGTACGGCCACCTGGTGTAGTCCACGCCGCAGAG 1037119 24 100.0 47 ........................ CGAGTAGATCTCCAGCGTCGTGGATGTCTTCGCGTGGCCGAGCCAGT 1037190 24 100.0 41 ........................ TCTCTATCCTTTTGTCGAAGTCTTCGTTGCGATAGTACTGG 1037255 24 100.0 44 ........................ GCTGTACGACGCCGGCGCAGAACTCCAGGGTGTGGACGATGGCG 1037323 24 100.0 45 ........................ CAGTACCGTGTCGTATAGTGGATGCAGAGCTTGACGGCCCTTACT 1037392 24 100.0 44 ........................ CGGGGGCATCCCGTCCCCCGAGAACGAGTATCTGATTAGGAGCC 1037460 24 100.0 42 ........................ GGGTGCCCAACGGACGTAGTCCCTAGTCTCTGTGTAACTTCC 1037526 24 100.0 43 ........................ TTTCGATCCCTGCATCATGACAAATGCGTCCCGCAATTCATCA 1037593 24 100.0 41 ........................ GAGATCCAGCAAATCATCTGCATATTCTCGCGTAGAGCGCT 1037658 24 100.0 45 ........................ CTCCATCGGGATTGGCCTCCCACCTATAAAATCTAGAGGAGAACT 1037727 24 100.0 40 ........................ CTCTTATCAACGCTTTTTCAAGTATACTATTGTGCTCTGT 1037791 24 100.0 52 ........................ CACACTTCAGCGCCAGCTTCAGCCCCTTATACACCACGACGTCGTGGGGGCG 1037867 24 100.0 42 ........................ CGGCACTTCCATGTTCATGTACGACCTTCTCCACGCCTCTCT 1037933 24 100.0 44 ........................ TGCGACACAATTCCGCGCTTCTTCGGCGCCGCCGCCGAGGAGCC 1038001 24 100.0 41 ........................ ACGTTAAAATACAATACATCGCCGCCTCTCACGGCGACGAT 1038066 24 100.0 41 ........................ TATGAGCAGGACTGGTGGAGGAGGGCGTTGGCGAACTCCGT 1038131 24 100.0 44 ........................ CACCCGGCGTGAACTTCAGCGTCGTGCCAACGCCGACCGGATGT 1038199 24 100.0 42 ........................ GTCATTCGACACCGCCGCATTCAAGATGGCAGTTGACAGGAG 1038265 24 100.0 42 ........................ TTTACCATACCGCTTATGTGGTGCATAGAAGTTCTAAGCGAT 1038331 24 100.0 41 ........................ GAGTGACGGAATGCACTGCGGCCGGCGGCACATGTGTTGCT 1038396 24 100.0 44 ........................ TTGACCTTAAGGCCCGTAAAGAATATGCTGAACAAATATGCAAT 1038464 23 87.5 0 .........A-A............ | ========== ====== ====== ====== ======================== ==================================================== ================== 38 24 98.7 43 GAATCTCAAGTTGAGGATTGAAAG # Left flank : GACCTCCCTCACTTTGGCCAGCCACCTCCTCCCACCCCCCTCAACCACCAGATACGACCCCACCGGCGCCTCACACGCCAGAAGAGCATAGGCAACAGCCTCCTCCGAACTCACAGAACTCCTAAACTGACGCGACACAAAACCACAAGACACACCACCACACAAAGAACAATTAATAAAGCCTAAACATAAATATTCTATATAGATCACGGCGTTTATAAATCGTCGTGCAACGTGCCCTTTCTTTTTGTAAAATCGTTCTACTCCTCCGCCGTTGTACCTTTGTAAAGCGGTGATCCAGTTTAAAAAACGGCGGGCAGAACAACGGCGGACGGCGCCGCCGACCTCCAGCCACACGCTTTCAACTACGGGACGCACAAGGCCAGCTCTAGAAAAACCAACAACCCAGAAAGAGCTATCACAAGAACACCCCGAAATCAACACAAAACCCACCAGAGAAAAACTTAAAAACCACCAAAAACCAAAACCCAGAAGGCCCA # Right flank : GCAGTGGTTCAACCAGCCGCGGTTCTTGCCGGAGAGGTTGGGGCCTATCAGCGCCACGGCGCCCTTCGCCTCTATCTCTATATCGAGAGCGAGATCCACGTTTCCATACTTCAGCGTGCCGCCTAGATAGACTTTCATGCAGTGTGTTGAAGAGCGCCTTTGTATGGTTTAAGCGCCTCGGCTTACTTTTTACAGGAGAGGTGGCAGAAGCAGCGCATTGGCTTTTGGCAGTCGGCTACGTTGGCGCCCTCTTGGAAGACGGCCCCCTCGCCGTAGGTGCAGTTGCACTGCGCTATTATGAACTCTTCGCCTGGGTCGCACTGGCAGAGTGCTGTGTAGAGCTCGTGTTTGTTGACGCACACGTGGTCGCAGTTCACATGCTTAACACACCATATGCAGTTTACCGCCAGCCCGGCTCCCGCGAGGAACACGAGGACCGCCATGGCTTTCCTGTCGGTGCAGCCGCCTCTGCATTTCGACGTCGTTTTGTCTCCGTCTGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAGTTGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //