Array 1 28578-30107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWB01000025.1 Pseudomonas aeruginosa isolate F, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28578 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 28638 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 28698 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 28758 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 28818 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 28878 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 28939 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 28999 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 29059 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 29119 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 29179 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 29239 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 29299 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 29359 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 29419 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 29479 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 29539 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 29599 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 29659 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 29719 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 29779 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 29839 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 29899 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 29959 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 30019 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 30080 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40270-38981 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRWB01000025.1 Pseudomonas aeruginosa isolate F, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40269 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 40209 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 40150 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 40090 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 40030 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 39970 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 39910 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 39850 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 39789 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 39729 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 39669 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 39609 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 39549 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 39489 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 39429 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 39368 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 39308 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39248 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 39188 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 39128 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 39068 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39008 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //