Array 1 132144-132307 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803701.1 Corynebacterium sp. HMSC062A03 Scaffold257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 132144 36 97.2 28 ..................A................. AACCCTTCTGTCTGCCGTACAATTGCCC 132208 36 100.0 28 .................................... TCGCATTGATAGAAACAGTTCGACCGCC 132272 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 99.1 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : TGGCCACGAACTTGATCTCCGAGCGGGAGTAACGGTCGTGGCGCGCACCCGCACGCTCTGCCAATCCCTGGTAGATGCGGCGCTTGCGCAGCAGACCATCACGCAGCGCCAGCGCTTCCATGAGCGTGATCTCATCGTCGAACGCGGTGGCCGTGTTCGTGGCGTTGATGGCGATGACGAGCTCATCGATGCGCTTGGTCACGCCTTCCAGCTCACGGAGGAGATCCGTCGGGTTCTCATCCGGTTCATCGCCTTCCTGAATGCGGACCGTCGCCGCGAGCCGGTCACTCAGCGAGTTGAGGCGCTCCTGCGCCTGGGCGCGCTCGGCCAAGGCTTCAGCAAGTAGCATGATTCCTCCTTAAGAAGTTAGAAGAATTAAGCTAGGGCTACGGCGCTTCGCTGTCAATAGATGATGAGATCAATTTCAGAGTCTTTGCGACAATTCGACTTTCCGCGTCCCTGGAAATCCTTCACTAAGCTATTGATAGCAGGGTAGTGAG # Right flank : CAGTGTGGCCCCAAAAGGGTCGTTTAACTGGAGTTTATCGGTGATCCTCCGCTAGAAAATCGTGAGCTGAGGTGGGGTATTCTCCATTTCGGAAGGCTCTGATTTGGAAAAGCGAATCGCTTTCGACCATTGAATATCAGTGACGGATATGATTCTCACATCTCCGCCTTCTGGTAGACCAGACTTGATTTGCTTGACGGTTGTCGCGATACGGGAGGCGAGGGGGAAATACTGAACGTAAACGCTTAGTTGGGATCTACAAAAGCCAAGGTCTAAGAGGGGGCCCGGCCCCCGGAAAGTAGACACCATGGGGTGGTGAAATTGTGGGGCTTACTTTAGCGCATTGTTACGCTGCGTGGGCTTCGTACTCTGTGGGGGTGAGGTACTTGCACCAGGAGTGTCTTCGGCTGGTGTTGTAGCGCACGCACCATGCGAAGACGTCTCGTCGGCAGACGAGCTGGTTGGCAAAGACTTTCTTGTCTTTGAGGACCTCTCGTTTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 218-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803708.1 Corynebacterium sp. HMSC062A03 Scaffold327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217 29 100.0 32 ............................. TCTACCCCACGGCGCGGCACCCCTGCCCGCCT 156 29 96.6 32 ............................T CGTGCCTACCTTCACGCAGGCAACTCTTACCC 95 29 100.0 32 ............................. CCCGCTTCACTTTTCGGTCTTTTCCAGATTAC 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : | # Right flank : CTCTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 143103-146488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803707.1 Corynebacterium sp. HMSC062A03 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 143103 29 100.0 32 ............................. TCTACCCCACGGCGCGGCACCCCTGCCCGCCT 143164 29 100.0 32 ............................. CCGGCCGTATCCGCTCCCCAGTGGCTCGGCCA 143225 29 100.0 32 ............................. GGACGCGCAGTAGCGGACGCAACTGAGGGCTA 143286 29 100.0 32 ............................. AATTGGACCCCGTGGCAGGCTCAGAACTCCCA 143347 29 100.0 32 ............................. TGAACGTGCGCATAAAACGGCGCAGCTGGCTA 143408 29 100.0 32 ............................. GCGCCTCATCCGCCGTGAGCGACGTCCGCTTC 143469 29 96.6 32 ............................G CAGGAGAGAAGTAAATCATGGGTGAGGAAATC 143530 29 100.0 32 ............................. TAGGCTGGCGAGTCTTCTTCAAGAAGGCCGAC 143591 29 100.0 32 ............................. CCCTGCTGCGACCTTCCGGGCTGCTTCTTAGA 143652 29 100.0 32 ............................. ACCCCAGTATCGCCTCACGGAAACGCAGAGCG 143713 29 100.0 32 ............................. CTGAACGGCGGGGAAATCTCCGTCTGCTATGA 143774 29 96.6 32 ............................G ACGACGCTGGAGACTGGGGCGTGCTTGGTGGC 143835 29 100.0 32 ............................. CTATGGGAATCTCGACGCCCATTAGAGACCGA 143896 29 100.0 32 ............................. CGGGGATGTAAACACGCGCACATCCGCGGTTT 143957 29 100.0 32 ............................. TCGTCGGGTTCGCCAGGCCACTGGTGGGTGGG 144018 29 96.6 32 ............................G GCGGGGTTTTGGAGGTCAGCCAGGTGCTTGCC 144079 29 100.0 33 ............................. ACGCCCCCACAGAAGACGAGTTAGGCGGCACCG 144141 29 100.0 32 ............................. CCCTTTAAAGGCGACTATCGCACTAATCGAAA 144202 29 96.6 32 ............................G TCGGGCTATTGGATTCGGTAGGTGTGTTTTTC 144263 29 100.0 32 ............................. CAATCGCCATTCCGTAGACTGTGGAGTCGCAG 144324 29 100.0 32 ............................. ACCCCATTGCCCAGCGTAAACACGGCTTCTAA 144385 29 100.0 32 ............................. TCAACGCCCTCCTGCTTGGCCCTGACGCAGCT 144446 29 100.0 32 ............................. AGAAAGGGGAATGATGGGTGAGGAGCAGATAC 144507 29 96.6 32 ............................G CGACGAGGGCCAGGCCCACGGCGGCGACGATG 144568 29 96.6 32 ............................T TAGAAACTCGCGGCCCGGAGTGGGAAGCGTTC 144629 29 100.0 32 ............................. TCGTCTCCGCCCACGTCACCCTGGAGGAGGCC 144690 29 100.0 32 ............................. CCAAACCCAGGCCCGTTCACCGTGAGCGTGGC 144751 29 96.6 32 ............................G AAAGAGGAGGATTTTCTCATGGCACTTTCCGC 144812 29 96.6 32 ............................G CGGGCTGGGCGGATATTGTTCTCGGCCTTCCA 144873 29 100.0 32 ............................. CCACCACGCATCTGAAAGGACAATCCGATGAA 144934 29 96.6 32 ............................G TAATATCCCCGCCCGGCGTCTCAATGGCGTAC 144995 29 100.0 32 ............................. ATTGGTGGTGTCACCGGAGTTGCCCATCTGTG 145056 29 96.6 33 ............................G CACAACCCTACTCAACACTGTCACACCATGCAA 145118 29 96.6 32 ............................G ACTCCCAGGACGATTAGACGACCCTGAGGGGT 145179 29 100.0 32 ............................. AAACCAGCTCACCCAGGCCACGGTACGAGTGC 145240 29 96.6 32 ............................G GGCCTAACCGACGCCCAAAAAATGCTCCTAGT 145301 29 96.6 32 ........A.................... ACGACGGTCTGGTGGTGCCCTGGGGTGAGGCT 145362 29 96.6 32 ............................A CCCATAGGGTGCACCTGGCCTAGAGTTGTCCA 145423 29 100.0 32 ............................. TCATTGTGCGTGGCCCCGCTGGTACCGGTATC 145484 29 100.0 32 ............................. GTTCATAATCATGTGGCCGTGATTGTTGAACT 145545 29 96.6 32 ............................G GTGCGCGAGCGCCCACACGTAAGGTTCAGCAC 145606 29 100.0 32 ............................. TGGAAGAGCTGGGCCTAGAGGTCAAGCGCCTA 145667 29 100.0 32 ............................. GCTGGCGTGATTCTAGGGGCTTACCTCTGGTG 145728 29 100.0 32 ............................. AATGAGCGCGGTCGCCAGGCCCGCCAGTACTT 145789 29 100.0 32 ............................. CGTCGCTGGGGGTGAGCGTCGTGGCGCTTAGG 145850 29 100.0 32 ............................. ACGGCTGACCGCTCGTTCTATTTGCCACGCAC 145911 29 96.6 32 ............................T CGCCTGTCTGAAAGCTTAGACGAACTGATTAA 145972 29 96.6 32 ............................G CGGTCGCGAGCTTAGTACCGGGGGCTAGCTCG 146033 29 96.6 32 ............................G TCAGCGGCGCGTAAAGCTTCCGCTGCCGCCTG 146094 29 100.0 32 ............................. ACCATCACGCCACCCCCACCGTGGTTAGATTG 146155 29 100.0 32 ............................. CCGGCTTTCCGCGCTGCTTCAATAAGTGGCCA 146216 29 100.0 32 ............................. GGGTCCCCAACCTGAGCCGAGTGGACTATAAG 146277 29 100.0 32 ............................. CAGTGCCGGTACTCTGTCTCGACACCGAGGAA 146338 29 100.0 32 ............................. GGCCAGGTTGAGGTGAAGTTCCCAGAGGGGCA 146399 29 96.6 32 ................T............ GGCACCGTATTACCCCTATGGACACCGCGTGG 146460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 56 29 98.8 32 GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : AGTGAGCTCGAGGTTATTGCTTCAGGCGTGAACTGGTCTGAAGAGGAGACACTTTCATGATCGTTCTCGTCGTTACAGCGTGCCCCGCTGGGCTCCGAGGTGATCTTTCCAAATGGTTGATTGAATTAACTCCTGGAGTGTTTGTAGGTCGCCCTTCAGCAAGAATTCGTGATCTGTTGTGGGAGCGAACAGTAGAACTATGTAAGGACGGAAGAGCACTATTGGTTTATTCAGCAGCCAATGAACAAGGTCTCGAGTTTAGGACTCACCGGCACCATTGGCAGCCAACAGACTTCGATGGAGTCACACTCATGGTTCGTCCCTCTCCTGAACGGAAGATTGTGCAGAGCAGAACTGGATGGTCGCGAGCACGGCAGGTCCGGTCTGCCTATCGCAAACAGAAAGGGAAGTAGAAAGAACTGGGGCACAGCCTATCCCTTGCCTCTGAGAAGTTGTATGTAAACTGAGCTTACGGCTCGATAATGCACTGTTCAGCAAGG # Right flank : CCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGAGTGCTCCCCGCGTAAGCGGGGATGAGCCCAGATAGGTGTTGTCGGCAACGAAGGTCAGTCTGTGCTCCCCGCGTAAGCGGGGATGAGCCCGGGGACGCGTTACCGACCGAATCACCCCGGCCGTGCTCCCCGCGTAAGCGGGGATGAGCCCCAATCAGCGAAAGCGGATCTACATCGGCTTCTGTGCTCCCCGCGTAAGCGGGGATGAGCCGCCATCGTCCGCTACAGCCTGCCTAATGTGATTGTGCTCCCCGCGTAAGCGGGGATGAGACCTCCACCACTGACTTGCCGTTGGGGGTGAAACGGTGCTCCCCGCGTAAGCGGGGATGAGCCCGCGCAGGCCGCTATGGCCAAGAAGGGAGCCTAGTGCTCCCCGCGTAAGCGGGGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146599-147115 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803707.1 Corynebacterium sp. HMSC062A03 Scaffold315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146599 29 100.0 32 ............................. AGATAGGTGTTGTCGGCAACGAAGGTCAGTCT 146660 29 100.0 32 ............................. GGGGACGCGTTACCGACCGAATCACCCCGGCC 146721 29 100.0 32 ............................. CAATCAGCGAAAGCGGATCTACATCGGCTTCT 146782 29 96.6 32 ............................G CCATCGTCCGCTACAGCCTGCCTAATGTGATT 146843 29 96.6 32 ..........................A.. TCCACCACTGACTTGCCGTTGGGGGTGAAACG 146904 29 100.0 32 ............................. GCGCAGGCCGCTATGGCCAAGAAGGGAGCCTA 146965 29 96.6 32 ............................G TCTCCCGAACATCTGCGATGAGGTCATCATCC 147026 29 100.0 32 ............................. GGCGCCGTCGTCTACAACTGGAACCTCCGACA 147087 29 93.1 0 ......................C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCCCGCGTAAGCGGGGATGAGCCCACCATCACGCCACCCCCACCGTGGTTAGATTGGTGCTCCCCGCGTAAGCGGGGATGAGCCCCCGGCTTTCCGCGCTGCTTCAATAAGTGGCCAGTGCTCCCCGCGTAAGCGGGGATGAGCCCGGGTCCCCAACCTGAGCCGAGTGGACTATAAGGTGCTCCCCGCGTAAGCGGGGATGAGCCCCAGTGCCGGTACTCTGTCTCGACACCGAGGAAGTGCTCCCCGCGTAAGCGGGGATGAGCCCGGCCAGGTTGAGGTGAAGTTCCCAGAGGGGCAGTGCTCCCCGCGTAAGTGGGGATGAGCCCGGCACCGTATTACCCCTATGGACACCGCGTGGGTGCTCCCCGCGTAAGCGGGGATGAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGA # Right flank : CTAATGCGCAGGATTCCTGCATAGATCAATAAGTGCTTTCCGCAGGGTCGAAAATCTGCTACATACGCTCGCGAGCTCCTTTCTTTGGGAGTCGTAGTCGATGAGCGGATGGTGGCGTTTACCGAACCGGAGAAGAACTAGATGGAGCCAGAGATTAAAAGTGAGGTGATCGGCTAAGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTATACCAAGTCTTTGACCTCATCGGTGTGGTGCTTAACGGCATTATTGGCGGCACGATTGCACGCCGTAGGGAATTCGACATTATTGGTTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCGGGCGGCATGATTCGTGACATGCTGATCTCGCACGGTCCGGCGGCTGCTATCTCTGATCCGTGGTATCTCACTCTGGCGTGTGTGGGTGCGCTCATTGCCTTCTTGACGGACCTGAAAGGCAAGGCCTGGGAAATCTTTCTTGAGCATGCGGATGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //