Array 1 221038-222408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQR01000062.1 Escherichia coli strain HT2012109 scaffold62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221038 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 221099 29 96.6 32 ...........A................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 221160 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 221221 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 221282 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 221343 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 221404 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 221465 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 221526 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 221587 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 221648 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 221709 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 221770 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 221831 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 221892 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 221953 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 222014 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 222075 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 222136 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 222197 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 222258 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 222319 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 222380 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 248111-249056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZQR01000062.1 Escherichia coli strain HT2012109 scaffold62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 248111 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 248172 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 248233 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 248294 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 248355 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 248416 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 248477 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 248538 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 248599 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 248660 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 248721 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 248782 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 248845 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 248906 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 248967 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 249028 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //