Array 1 169855-171042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOE01000101.1 Escherichia coli strain HT2012006 scaffold_285.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169855 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 169916 29 96.6 32 ............................T CCATTTCAATCTATACCAGATGGAATGTCACC 169977 29 100.0 32 ............................. ATGGCGCGGTTTGTGTGTGGCTGAGAAATAAG 170038 29 100.0 32 ............................. CCGTTCCCATACGGGCTATGGGGCAGCGATGG 170099 29 100.0 32 ............................. CCAACACGGCGACCATGACTAATTATATGGGG 170160 29 100.0 32 ............................. GTCGCGCGCGTCCAAAAGATAACCAGTTTGTT 170221 29 100.0 32 ............................. GCTCCCTGTCGGTTGTGATTGATAATGTTGAT 170282 29 100.0 32 ............................. ATATTTCAGGCGTTGGCCTGCGCGTGACTGTC 170343 29 100.0 32 ............................. TGATCCAGTGAGTACCGATCCGGGAACAACCG 170404 29 100.0 32 ............................. AGTCCACGCGATGGGCGGACACCCGCCGCGAA 170465 29 100.0 32 ............................. CGGCGGTGGTTGTCCTGGCTGAACGTCTGCCC 170526 29 100.0 32 ............................. TTCCAGCAGCATCTGCTATTGATTGGATCTTA 170587 29 100.0 32 ............................. CTCACCGTGCCGCAATCCGGTATGAATAGCAA 170648 29 100.0 32 ............................. CCGACGTACAACTACGGAGGCGTGTCGATTCC 170709 29 100.0 32 ............................. TGGGGGCGATTGACGAGCAGGCGCGTACCGTT 170770 29 100.0 32 ............................. CAATCCACGCCGAAGCGCTGGAAATGGAAAAA 170831 29 100.0 32 ............................. TTTACCTGCTCGGTGATATCGTCCTGCAAATC 170892 29 100.0 32 ............................. CGATCTTTTCCTACCTGGTACAATCAGTAAAT 170953 29 93.1 32 .T..........G................ GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 171014 29 89.7 0 A...............T...........A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTGAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCACTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATTGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196528-197227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOE01000101.1 Escherichia coli strain HT2012006 scaffold_285.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196528 29 100.0 32 ............................. CCGCCCGCGATCGCGTCTTCCAGGGTAATGAC 196589 29 100.0 32 ............................. CGATTGCTTGATGCTGGTGTGCTGGTACCTGT 196650 29 100.0 32 ............................. GTCCCAAGTATGGAAATTTTTGCATGGATTGT 196711 29 100.0 32 ............................. AGTATTAAATCCAGACTGTATGAAAACCTCAC 196772 29 100.0 32 ............................. AAAAAATGCGACAACGGCAGCCATTCCGATCT 196833 29 100.0 32 ............................. CACTGGACCTGTTTTGCTATTGCCACACGCTG 196894 29 100.0 32 ............................. AATACGCTGGATAAATTAATGAGCCAGGTATC 196955 29 100.0 32 ............................. TGCGCCCTCGTCCGGTTTCATTAGCCGCTTTC 197016 29 100.0 32 ............................. AAAAAACAGACTGGATGCAGGCAGACACTACG 197077 29 100.0 32 ............................. CTGAGCGATCCAGCGCTCGACTTTGATCGTGA 197138 29 96.6 32 .................A........... GGCGCACTGGATGCGATGATGGATATCACTTA 197199 28 75.9 0 ..A........C..T....A..-.C...C | T [197218] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGGGAAATACAGCCGCCGGCCCCACCTGAAGATGCGCAGCCTGTTGCTATTCCACTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGCTGGAAGTCCGTGCAGGAGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATATCCGGACTGGCGGAGGAGGGCAATGTAGTGATGGCATGGGCAACGAATACAGAATCGGGATTTGAGTTCCAGACATTTGGAGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTAAAAACAAGGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATCAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCTTTATCAATATGTTGCTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //