Array 1 182122-183091 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMN01000003.1 Dysgonomonas sp. 25 scaffold3_size454359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 182122 47 100.0 30 ............................................... CGCCAAACGTGCTTTCGTTTTCAAATCATA 182199 47 100.0 30 ............................................... AGGATCTTGCGCCGGTATACGTATGTCATA 182276 47 100.0 30 ............................................... AAACGGATAGGTACGCTTAAAGACGGATTT 182353 47 100.0 29 ............................................... TTACAGAACGAAATAAACCCATTTTATTA 182429 47 100.0 30 ............................................... AACACAATTTAATTATGGCAGAAGAAACGA 182506 47 100.0 30 ............................................... GGCTGTCAATAAATCACGAACTTTCTTTTT 182583 47 100.0 30 ............................................... ATATGGAAATAAATGGAAATAATCTTGCTT 182660 47 100.0 30 ............................................... AGAAAATCATTAGATTTTTTTCAAGTTCTT 182737 47 100.0 30 ............................................... ATAGTCCCGAGTTTTCAGAAGCATGGATAT 182814 47 100.0 30 ............................................... CGAAAAAAACAGAATCTCATAAGCCTCTAT 182891 47 100.0 30 ............................................... TTGATGGAGCGAAATATATCGGAGTTGCAA 182968 47 100.0 30 ............................................... TTTAACTCTTCACTGTTCATTCGTTCTAAT 183045 47 80.9 0 ..............................A.T..A.A..A..TTCT | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 98.5 30 GTTGTATATCCTCTGCTAAGTTACAAATTTTGAAAGCTAATTACAAC # Left flank : TTTCGGGGGAAGTTCGGAAGATTGTATATCCTGATATAATTGTCTGATCGAAATGGGCTTGTCCAGATTAAATGAATATAGAATTATGTGGGTAATGGTATTTTTTGATTTGCCGACCGAGACAAAGAAAGAACGAAAAATGTATTCGGACTTTCGGAAGAAGCTTATACAAGATGGTTTTACGATGTTTCAGTTTTCGATCTACTTACGTCATTGCGTTAGCCGAGAAAATGCCGCTGTACATATTGCACGGGTTAAAAAGAGTTTACCTCCTAAAGGTTATATTGGAATTTTATGTGTTACGGATAAACAATTTGAAGCGATGGAACTTTTCTATGAGAAAGAAGAAAAGAATATTTCTACCCCATACCAACAGTTAGAGTTATTTTAGAAAGCAAAAAATCGGGAGTATTCCCGATTTTTCTGTTTGGATATACACTTTTTTCTGATCCTAAATTTTATTGTAATTGTTTGATATATAGCCTTAATAATGAGGGTAT # Right flank : TGCTCCAATGATTATTCCTTTCTATTTATCTCACTTGGGGCTGTACCAAAATGTTTCGTGAAACAACGGGTAAAGTACTTCGGGTCGTTAAATCCTACCTCATACGCTATTTCAGATATGCTCATATTACCCTTGCTGTTTTGCAATAATTCATATGCAACAGATAATCGATAATTACGAATAAAGTTGCCTGGAGACTGCCCTGCCAAGGTATGCATTTTTCGATTCGTAACACTCTTACTCATGCCTATTGCGTCTATGAAATCACTAACTTCATATTCTGGATTCCTATAATTCTCTTTTACAATTTCTATAGCTTTCCGTAAAAATCTATCATCAATGGATTCTTCTGCAATATTCAGTTCGTTAACGTCCATTTTTAAACTGAATCTGCGCTGATATGCCCGCCTGCTCTCTAATATATTATTAATCCGCGTCAATAGCAATTCCTCATCAAAAGGTTTGGAGATAAATTCATCTACTCCTGTTTTAAAGCTACA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATCCTCTGCTAAGTTACAAATTTTGAAAGCTAATTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 78879-79242 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVMN01000005.1 Dysgonomonas sp. 25 scaffold5_size265731, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78879 36 100.0 30 .................................... GTCTATTTGAAGTGAATCTATTTGATACGA 78945 36 100.0 30 .................................... TCGAGCTGTGAGCCTTGTAGCCTGTTGTCG 79011 36 100.0 30 .................................... GTCGTTGCGGAGAATGTTCGCGGACTTATT 79077 36 94.4 29 .....................C........C..... GTCTATTTGAAGTGAATCTATTTGATACG 79142 36 94.4 29 .....................C........C..... TCGCACGAGAATGACGCCGCAGAAGACTA 79207 36 80.6 0 .................A.......T.GCCC.T... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 94.9 30 GTTGTATATCCTCACAGGATGAAAGCTAATTACAAC # Left flank : ATAATTTATTTTATTGATATTTTCATTAACTTTACAAAAAAAGCATGAAGAAAAATATAATAATATATTTAGTGTTGGCTGTTGCTATTTTTAGTTTTCCATCGTGTGATGTTTGGTTGGGAGTACGGGGTACAGTTGTTGATTCTGAAACAAGCGAACCCCTAAAAGGTGTAAAAGTTTTTATAAATAATGAGAAAGGATTTACTACCACTGATTCAATTGGAAACTTTTATATTTTAAGTGAAAAAAATTATGCTTTTAAAAAGGTAAAGAATGCTTCTTTAGAACTTAGATTTGAGTTAGATGATTATAAACTTTTAGATAGGAATATGTTTGTAAATAAAAAAGATAGTATTTTTTATCTCGAAAAAATAAAATAAAAGCAGGTAATGAATCTGCTTAACTTCTTCAATATTTATGTATGATATTCAATTATAATCTATAATGGTTGTACCTCACACATAGTGTTCGGACATCTTGATGTCCTTCCCATATCCGCT # Right flank : CGGCTCGCTTGCCGTCCGATACGACAAATACCTGTCTCTCGCTGCTAATATACAAATTTAGAATGGAGAATTATATAATCTTCCCGAAGGATTTTTATCTATAATCCTGCTTTATTCGGATATAAAGTTTAAATTTACAAGTAATAAAAGTAGTATACAAACACATTAAAACACACACAAAATGAAAGCAATGAATTTATTAAAGGCTTCACTCGCCCTTTTTTCTGCATTTCTTATCGCTTGCGGAGGGAATGATTCTCACCAGAAAGTAGATACGCCGAAGGTTTCGGAGCCGCTTGCAGAAACAAAAACAACACAAGAGACACAAGAAACACCGCCGCCTGCTTCTGTTAATGGCGTTGTAAACTATCTCGGCGCGCAAGCATCTATCACTTTCGACGGAGTAGCCTATAAACTGGCTTGGAGTAATCCGCCACAGATGAAAGGAATGTATTATATTCAGGAGTATATGCCTGCCGGACAGACGATAGAGCAGTACG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATCCTCACAGGATGAAAGCTAATTACAAC # Alternate repeat : GTTGTATATCCTCACAGGATGCAAGCTAATCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //