Array 1 39621-35991 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYS01000001.1 Salmonella enterica subsp. enterica serovar Corvallis strain 2011K-1068 NODE_1_length_485626_cov_3.83921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39620 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 39559 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 39498 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 39437 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 39376 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 39315 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 39254 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 39193 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 39132 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 39071 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 39010 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 38949 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 38888 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 38827 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 38766 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 38705 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 38644 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 38583 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 38522 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 38461 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 38400 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 38339 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 38278 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 38217 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 38156 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 38095 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 38034 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 37973 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 37912 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 37851 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 37790 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 37729 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 37668 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 37607 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 37546 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 37485 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 37424 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 37363 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 37302 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 37241 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 37180 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 37119 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 37058 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 36997 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 36936 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 36875 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 36814 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 36753 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 36692 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 36631 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 36570 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 36509 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 36448 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 36387 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 36326 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 36265 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 36204 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 36143 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 36082 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 36020 29 96.6 0 ............T................ | A [35993] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57354-56167 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYS01000001.1 Salmonella enterica subsp. enterica serovar Corvallis strain 2011K-1068 NODE_1_length_485626_cov_3.83921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57353 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 57292 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 57231 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 57170 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 57109 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 57048 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 56987 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 56926 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 56865 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 56804 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 56743 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 56682 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 56621 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 56560 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 56499 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 56438 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 56377 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 56316 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 56255 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 56194 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //