Array 1 454-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYT01000175.1 Lactobacillus sp. UMNPBX17 NODE_175_length_498_cov_0.977427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 453 26 100.0 35 .......................... AGAATACTGGCTTTACGAATATTGCCCTTCAAGCC 392 26 96.2 35 A......................... AGAATACCTTATACTTGAACGGTAGTTTTCAAGGT 331 26 92.3 35 ..AT...................... AGAATACCTTTTTCAGGAATTGTTACTGTATTTCA 270 26 88.5 35 .GAT...................... AGAATACCTTTTGCCTTCTTTTTTAACAGCGTTAA 209 26 92.3 35 T..T...................... AGAATACCTCTGAAACATAATTTCGGACGTGTGCC 148 26 96.2 35 T......................... AGAATACTCATTATTCCATTGTTCCCAAATACTAT 87 26 84.6 35 TC.TG..................... AGAATACTAGAACTTTTAAATTTCAGAAAAGATGT 26 26 92.3 0 T..A...................... | ========== ====== ====== ====== ========================== =================================== ================== 8 26 92.8 35 GTTCAGGATCATCTCCACATACGTGG # Left flank : ACATACGTGGAGAATACACTCTAGGATAAGAGTTCGCTTTATTG # Right flank : G # Questionable array : NO Score: 3.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGGATCATCTCCACATACGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 2162-4082 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYT01000018.1 Lactobacillus sp. UMNPBX17 NODE_18_length_34843_cov_65.4286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2162 29 100.0 32 ............................. CAGTTTTGCTTGGTGAACAGGCTGGTACGTTA 2223 29 96.6 32 ............................C CATCATTGGCGGTTAATGTAATTGTTTTGTCA 2284 29 100.0 32 ............................. GTTGCACACTTATTTTACTGGTACGCATTGCA 2345 29 96.6 32 ............................C ATCGGTGACGATGACACGCAATTACCATTATT 2406 29 100.0 32 ............................. AATCTAAATCCTTAGACGGGGTTAGTGTAATT 2467 29 96.6 32 ............................C AATTCAATCACTAATGGACTATTGACACCATA 2528 29 100.0 32 ............................. TCATCAGCTAATTCATTAGGATTCATCTACTA 2589 29 100.0 32 ............................. TTCAATTAATTACCAGATTAACTTGTTGACTG 2650 29 100.0 32 ............................. AGGAACATCTAACACAAATTTGAGTAGATATG 2711 29 100.0 32 ............................. ACATTCTTAATTTGTTGCTCAATATTACTAGT 2772 29 100.0 32 ............................. GAGCGTACTTGACCATGTGATTCAACTCTTTG 2833 29 100.0 32 ............................. ATCGCTGTCATCCTCTTTATTCACCGCAATAA 2894 29 96.6 32 ............................C AAACCTGATTTTCATTTTCACAGTTTAAGGCA 2955 29 100.0 32 ............................. GTTTTGATCCCAAAATTGCGTAAATATTTGAT 3016 29 100.0 32 ............................. AAGAGGGCAGAGTCCAAGTGGCTTTGTTCATA 3077 29 96.6 32 ............................C ATATGTTCATTGCCTTTGATGTCCTTAGGACG 3138 29 100.0 32 ............................. AATTGATGGATCTGGTGCATCTGCAATATATG 3199 29 96.6 32 ............................C TACCCAGCTCACGTTTTGCTAATGTTATGAGG 3260 29 100.0 32 ............................. AGTTGTGGACATGTCAGCAGATGCTAATTTTT 3321 29 96.6 32 C............................ AACAACGGTAACTCCTATAGCTGGAGTGAGTG 3382 29 100.0 32 ............................. AAAATTTGGTTTAAGAATCTTAAGACTAGTGA 3443 29 100.0 32 ............................. AGATTCGAGTGGCTGGTTAAACGCATCCATTA 3504 29 96.6 32 ............................C AAGCTTCATTAGTTCAGCAAGGTGACAAGGCA 3565 29 100.0 32 ............................. AAGAGTAGCGGTCTTTTTATCTGCATTAATTG 3626 29 100.0 32 ............................. TAAATCTGCTTTGATGAATCTATCAGGCGTTA 3687 29 100.0 32 ............................. ACAACTAAATGCTGATTAGCAAGAGGAGTAAA 3748 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 3809 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 3870 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 3931 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 3992 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 4053 29 82.8 0 ...........AC....T......T.A.. | A [4074] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.4 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1228-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCYT01000035.1 Lactobacillus sp. UMNPBX17 NODE_35_length_17770_cov_52.6968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1227 28 100.0 33 ............................ TAGCTGTTTCGTCTTCTCTAACTGATTTTGTAG 1166 28 100.0 33 ............................ TCATCAATTACTAAATCACTTATATCATAACTA 1105 28 100.0 33 ............................ CTTGCATCAAGTCTTTATCATCAATCTTGTACC 1044 28 100.0 33 ............................ CTTGTTGTGGCACTGGCTTTTTAAGCTCATTTG 983 28 100.0 33 ............................ TGCTGTCATAGATCAAGGCATTACTAATGTGGC 922 28 100.0 33 ............................ CTATACTAGATTGGTAAGAAGCAACGTCAACGC 861 28 100.0 34 ............................ TGTATAGAACTTCACGCTTAGCGTTCTTTTCATA 799 28 100.0 33 ............................ TATAAGCCACTAGAACTCTGACATCGTTTAGCA 738 28 100.0 33 ............................ CATAAGCTTCACCTACGATTTTTTGATAGTTTT 677 28 100.0 33 ............................ TGTATGTTTCTCGTATGATATTTGCTAATGATA 616 28 100.0 33 ............................ CAGTTTAGGTACCATTTTTTGACGATCAAAATC 555 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 494 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 433 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 373 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 15 28 96.7 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTCTGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : TAGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATGTGAAGAATTATAAATTCGTAAATTGCAATAATAAATTGAACACTTAAGCTGCTTGATAGATATGATCCAATTCTCTTTCAAAAATTTCATCTGGTGTATGATATGCCAATATTTTTCTTGGTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //