Array 1 231934-233119 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPT01000003.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_1508 NODE_3_length_414988_cov_0.345485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231934 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 231995 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 232056 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 232117 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 232178 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 232239 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 232300 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 232361 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 232422 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 232483 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 232544 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 232605 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 232666 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 232727 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 232788 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 232849 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 232910 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 232971 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 233032 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 233092 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249789-251404 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXPT01000003.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_1508 NODE_3_length_414988_cov_0.345485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249789 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 249850 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 249911 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 249972 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 250033 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 250094 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 250155 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 250216 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 250277 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 250338 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 250399 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 250460 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 250521 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 250582 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 250643 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 250704 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 250765 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 250826 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 250887 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 250948 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 251009 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 251070 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 251131 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 251192 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 251253 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 251314 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 251375 29 100.0 0 ............................. | A [251402] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //