Array 1 50361-49905 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCX01000003.1 Apilactobacillus kunkeei strain LAfl contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50360 29 100.0 32 ............................. GCTATCGTTTTATCTGATTACGTTTTGATTAG 50299 29 100.0 32 ............................. GCCAATATCAACAACCGTCTAAGCTCATCTAT 50238 29 100.0 32 ............................. TAAATAAAGACGTTATCATGACCGGTTTCGCC 50177 29 100.0 32 ............................. TTAATCCAACGCCGTAAACAAATAGGACTAAC 50116 29 100.0 32 ............................. TGAAACCCTTCCATCAACATTGCGAAGACCCC 50055 29 100.0 32 ............................. GCGTTATGAGGCTCTTATTCAAGAGAATCTTG 49994 29 96.6 32 ....................G........ GATTATTGGTTATTCCCCTAAACTCGACACCT 49933 29 82.8 0 ...T.........G.........A.A..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTAGTTCCCGCATACGCGGGAGTGATTCT # Left flank : ATATAATCATCAGGAACAAGACCATGCATAAATAATGCCTCAACAATATTTTCATCCAAATCTTGTAATCCTTGATAACTTTTTTTCATTTGAAAGGCAGGTGTAGCTTTACCTAAGTCATGGGTAATGCCGACGAATTCTACTATTTTTTTAGCATCATTATCATCTATTGCATTTTCTATAATTTGTCGTTGATGCTCACTTAAGTAATGATTGTACAACATACCAATTACAAATTTAGTATCCAGAAGGTGTTGACATAATGGTAACCACTTAGCACTACCATCTATTCCTCTGGATTTTTTAGCCCAAAATAAATTTAGATCCATAATATATCCTCCGTTTTAGATTAACTAAAATTATTTTACTCTAGATTCATAATCGTTAAAACTTTTTATGGAATATTCGTTTATCATTTTAATAAATGTTAATATAATAAAAGTGAATGTATTTTTACCAAATTAAAATACAAAATGTTGATTTAAAAGGTTTTCTGTAGT # Right flank : TGTGTAGTATCCATGCATTTTTTAGGCAACTTTTTTCGCATTACATCAGATCTTTTATACCTAATTGTTTAGCAGTACTAAAAAGGAATTGGCTTAACACCGGTTCCTTTTTATTATTCTTTAGTTTCTTTCTTTTCGTTGTTTTGCTTTAGTAGTTTTGCAAAAGTAGTCATTTGACCGTATGAGTCTGCACCATCATTTGGTACAACCACCATGTTGGTGTCTGAATTAGCTAGATTACTGAATGCTTCGATGCTTTGAGCATTGAAGTACTTATCATCTGCACCTTGCAAAGCTTCTTGAATCTTGTCGATTCTGTACTTTTCAGCATCGGCCTTAGTCTTGGTAGCTTGAGCGTTAGCTTCAGCAGTCGCAACTAGAGCTTCGTTTTGCGCCTTTGTACGTAATTCAACTGACTTGGCATCCCCTTCAGCACGTGAAATTTCAGCTTGGCGTTCACGGTCAGCAGTAAGTTGAGTATTCATGGCTTCTTGAATGGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTTCCCGCATACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 61343-60337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXCX01000003.1 Apilactobacillus kunkeei strain LAfl contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61342 29 79.3 32 .A..A..G..............A..AT.. TTAATTGTAGATTTACCGACGCCACCTTTGTA T [61336] 61280 29 79.3 32 ......G........TC...A....AT.. TGAGTTGGCGCGAAAAAGAATGCGGCATGGCT 61219 29 100.0 32 ............................. TTGAACGTATCAAAAAGGATAACTCCTACGTT 61158 29 96.6 32 C............................ ACTAAGAACCAACTTGATGATGCAATTAATCA 61097 29 100.0 32 ............................. AACAAACAAAGTAGAGCTAACTTTGATAAGCA 61036 29 96.6 32 ..................T.......... CCGTTATGTACTAATACAGGACCATACCATTG 60975 29 100.0 32 ............................. TTGGGAAAGATATCAAGCATTTACGTGAAGGA 60914 29 100.0 32 ............................. ATCTTTAGCAATCTTCACAATTGCTTTATATG 60853 29 96.6 32 G............................ AACACTGTAATCACACCAGATGGCTGAATCGA 60792 29 100.0 32 ............................. GAAAGTCAACTTAAACAACAAGCCACTGATTT 60731 29 100.0 32 ............................. GCCTACATTATTATGTAGCGAAAATTGTCCCC 60670 29 100.0 32 ............................. CACACATAACTATATTTACAAATTGGAAATGT 60609 29 100.0 32 ............................. AAGTTAAGACGGCTTTTTTATTTGGAAGAACC 60548 29 100.0 32 ............................. CGGTCGAGAAATTATTAAACCTTTCTATGACG 60487 29 100.0 32 ............................. GTTACCGATTGAGTTCGATCCAGATTCGCCTA 60426 29 100.0 32 ............................. ATAGTGTAATCTAATTGTTGGCTCATACGTTT 60365 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.0 32 AGAATCACTCCCGCGCTTGCGGGAAGAAC # Left flank : CAATGGTAGCTCAAATCGAAGTGAACCCATTCTGCCAAAACATTGAAAAAGTTCAATATATGCAAAACTACGGTGTTCAAATTGAAGCATGGGCTCCTTTCGCCGAAGGTCAACATGACCTATTCAAGAATGAATTACTTCAATCAATCGGTGACAAGTACAACAAGTCAGTCGCTCAAGTTGTGCTTAGATGGTTGTACCAAAGAGATATCATCCCTTTGGCCAAGTCAGTTAAGCCAGAAAGAATGCAACAAAACATCGATGTCTTAGACTTCGAACTATCAGACGAAGATATGGAACAAATCAAGACACTAGATACCAATCAAAGCCAATTCTTTGATCACCATGATCCAAAGATGATTAAGTGGATGGCTGAACGTACAATCGAATACTAAAACGATAATATTATAAAAATAAAAACACTTTCGAAGACATTCTCTTAAAACATTGAAATCGAAAGTGTTTTTTTGTGACTTGAAATTTATATCTAATGATATATA # Right flank : ACTAAAGAAACACCGTCATATCAGCTTTTTAAATTTAGTTTTGCTCTGAATCCATTCACTTTTCTAGATAACTTAAAAGTAGATTCAGCATCAGATAAAGCCCTATGATATATCTTATCGCCTATATCATAACTTATTAAAACATCTGATAATTTATAACTATCAATAAATATTTTTTCACGTTTTACCAATGGTAATAAATCAATATATTTATTATTAATTGGATCTAAACCCAATCTATCTAAAGCACTATTAATAAAATTTAAATCAAAGTTAATATTATATCCGACTAAAACACTATCACCAATAAAATTAACAAACTCATTAAGCACTTCAGATAAATCCTGACCCGTTTTCGTTAACAATTTATTGTCAATCCCAGTTAAATCAGTAATCTTTTTCGGAATTAAAGAATTAATTTTTATTAAATAATTAAACTTTATTATTTTTCCGGAAGAAAATTTTACTGCACCTATTTCAATAATTTCATCAGATGTAGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCTTGCGGGAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //