Array 1 46-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWTC01000072.1 Streptobacillus moniliformis strain ATCC 49567 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46 36 100.0 30 .................................... TGAAAATTAAATTATAAGCCAGCAAGGGAA 112 36 100.0 30 .................................... TATAAAGTCAAGAAATAAATGCCCACCTTT 178 36 100.0 30 .................................... ATACTTTTGTTTAATAGATATATCACAAGT 244 36 100.0 30 .................................... ACTTTAGAAAATTTAAAAAAAGAATTACTA 310 36 100.0 30 .................................... GCTTAGGGGGAGCGACCGCACAACAAGGGA 376 36 100.0 30 .................................... GCTTAGGGGGAGCGACCGCACAACAAGGGA 442 36 100.0 30 .................................... GCTTAGGGGGAGCGACCGCACAACAAGGGA 508 36 100.0 30 .................................... CATTGTCGTTCAATATTTTAGTGTCATAAA 574 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 CATTCACATTATTCAAATTTACCAAGAATCTGTATC # Left flank : CCAAGAATCTGTATCTTATGAAAGTTTCATTTAATTGTACATTTTC # Right flank : TTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTCACATTATTCAAATTTACCAAGAATCTGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 740-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWTC01000042.1 Streptobacillus moniliformis strain ATCC 49567 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 739 36 100.0 30 .................................... ATTTTACATAAAAACGATAAAGAAAAAAGA 673 36 100.0 30 .................................... TTGGAGAAATAGATTGGAAATAACAGAAGG 607 36 100.0 30 .................................... AGGAATTACAAAATTTCAAGTGAACAATAT 541 36 100.0 30 .................................... TTACAGATATTTATCACATAGAGATCGAAG 475 36 100.0 29 .................................... AAAAGTTTTAAACCTAGTAGATACTAATA 410 36 100.0 29 .................................... TAAGAGATAATGAAATAACCAATTTAAAA 345 36 100.0 30 .................................... TCAACACTGCAATAAAAAATCCGAATTTGC 279 36 100.0 30 .................................... TTTAAAGATTATGCGATATCAAAAGAATAT 213 36 100.0 30 .................................... AGAGAAAATTAATACTTGAAAAGAAACAAG 147 36 100.0 30 .................................... ACAAAAAATAGTTGACAAATAAGCAACGAT 81 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : AAAAGTTATCTAAACTTTTTAGAAGAAGGTAATGAAATGCTGGCTATACCTGAAATAATAAAAATAGATTTTTATGACCTTTTTAAAGAGTTATAGAGAAATGAGATTACTTGTTTACTTTGATTTGCCAGTATCAACTAAATTAGAAAGAAAACAAGCTCAGGATTTTAGAAAAAATTTGTTATCTGAAGGATTTATTATGATGCAATTTTCTTGCTATTCAAGATTTTGCAGAAATGATGCTGAATCTTCAAAATATTTTAATAGAGTAAAAAAATTGAGTAATAAATTAAGTGGTGGAGAAGTAAGAATTTTAAAAATTACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCTAAATTATCTGAAATAAAGCTTTCAAAAAATCCATTGGTTATTTTTTAGTGTGAATTTTGTGCTAATGGATTGATTATTTAAATTTCAAACTGTATTTTCTAGCAATAAAATTATATTAATTTCATTGCTAGAG # Right flank : GACTACGGATTAATAGATATTGATTACATAAGATACAGATTCTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 434-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWTC01000039.1 Streptobacillus moniliformis strain ATCC 49567 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 433 26 100.0 40 .......................... AATCTGTATCAAAAGCTAGGTTTTTCAGAAGATAAAATAG 367 26 100.0 40 .......................... AATCTGTATCGCACTTTTTAAAATAATTTTTGATTTGACT 301 26 100.0 40 .......................... AATCTGTATCGCACTTTTTAAAATAATTTTTGATTTGACT 235 26 100.0 40 .......................... AATCTGTATCGCACTTTTTAAAATAATTTTTGATTTGACT 169 26 100.0 40 .......................... AATCTGTATCTATTCATTCTATTAATATTATGACTTAAAA 103 26 96.2 40 ......T................... AATCTGTATCTTATGAAAGTTTCATTTAATTGTACATTTT 37 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 7 26 99.5 40 CATTCACATTATTCAAATTTACCAAG # Left flank : ATTATTGATTGATGATTTTGATAGTATTTATACTAAGAATAAATTTTTTGAAAAAGTATCATATATATTATCTAAAATAAAGGATTTCAATACAAAATGTATATTTTTTGTGAAAAATGAAGATATAGTATATGAATTAGTTTCTAGTGGACACAAAGTATTATTTATTGATAATAACAAACTAGTTGAGTTACCTAGATATATTAATTTTATTGATGAAGTATACCTTTATTCAGAAAAAGAAATAGAAAATAAAATAGAGAAAATCCGAAAAGAAAAAGAATTTGACATAATTAAGAATTATTTAAAATAAAAAAAGCTGCTTAAGGCAGCCAGTCTTACGATTTTGTATCTTAATACAGAATCTGTAGTAAACTTGAATAATGTGAATCTTATCTACACAATTATTATAGCATAATATTTAAAAAAGTCAACACAAAAATCATTTAAATTTAGTAAGAATCTGTATCTCAGATTTTTAAGCCTTTTTTTTTAAAAAA # Right flank : GAATCTGTATCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTCACATTATTCAAATTTACCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //