Array 1 433044-432116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTZE01000010.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 433043 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 432983 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 432923 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 432863 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 432803 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 432743 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 432683 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 432623 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 432563 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 432503 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 432443 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 432383 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 432323 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 432263 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 432203 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 432143 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270174-271578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTZE01000012.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 270174 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 270234 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 270294 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 270354 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 270414 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 270474 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 270534 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 270594 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 270654 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 270715 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 270775 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 270835 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 270895 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 270955 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 271015 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 271075 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 271131 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 271191 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 271251 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 271311 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 271371 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 271431 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 271491 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 271551 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 281633-280104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTZE01000012.1 Pseudomonas aeruginosa strain AZPAE13877 AZPAE13877_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 281632 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 281572 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 281512 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 281452 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 281392 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 281332 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 281272 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 281212 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 281152 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 281092 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 281032 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 280972 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 280912 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 280852 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 280792 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 280732 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 280672 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 280611 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 280551 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 280491 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 280431 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 280371 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 280311 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 280251 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 280191 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 280131 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //