Array 1 40336-38516 **** Predicted by CRISPRDetect 2.4 *** >NZ_POLS01000053.1 Streptococcus suis strain 1180 SS_1180_Contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 40335 32 100.0 33 ................................ TTTTTTTGATAACTTAATTTTAACTTAAAAGCC 40270 32 100.0 34 ................................ TTGAATAAAGTGAACACACATTCTGGCTCCACTC 40204 32 100.0 34 ................................ ACAATCGAGGACGGTATGACGGATAAGAACTCTC 40138 32 100.0 35 ................................ AATAAAATCAAAGTCAGCTTGTGAATAGGCGATAA 40071 32 100.0 33 ................................ ACTTCGGCAGCTCGAAAACCTTTGGCATTTAAG 40006 32 100.0 34 ................................ CCATCCAAGTTCACGTTCTGGTTGATTGTATTGT 39940 32 100.0 34 ................................ TCTCCGCCTCGATAATGTGGATGTAAGTGGTCTA 39874 32 100.0 35 ................................ CAGTTGATAGCTCTGTACCTACAATTGTTACTTCC 39807 32 100.0 36 ................................ ATCAATGTTTATTCGCTCATTCAGTGCCTCTAATTC 39739 32 100.0 33 ................................ TCCTAAACGCATATGCCTAAAATGTGGGAAAGT 39674 32 100.0 34 ................................ TCAAACAAGATATAGAATGTACATACTTTATAAA 39608 32 100.0 32 ................................ ATCTAATAAGATATACAAGATAGACACTAATC 39544 32 100.0 33 ................................ AAACTTTGAATAACCGAATTGACAGAGAAGTTA 39479 32 100.0 35 ................................ TGGGAACGGAACTGACATCTTACCTGAAATAGAAT 39412 32 100.0 36 ................................ CGCATAATCTCGGAGCCCTGCCTATTATTGAATACC 39344 32 100.0 35 ................................ CAATAATTCCTGCTATGCCGTTTGCGGTTGCGTTC 39277 32 100.0 34 ................................ CGTAAGGTTCAACTTTTGAACTATTCAACTTCCG 39211 32 100.0 34 ................................ AATTGTCACCTCCAAATTCTTGAAAAATGCCACT 39145 32 100.0 34 ................................ ATCTACTGGTACTGCTTATGACACTACGGATAAT 39079 32 100.0 34 ................................ GATTTAAAAACAATCCAATCCTTGCATCAAAACC 39013 32 100.0 36 ................................ ATCGATACGGTAGGTCTTGCCTTCCGGAGTCACGAT 38945 32 100.0 36 ................................ GACGAAAACAGGTACGCAGTCAACTATCTTCACAGC 38877 32 100.0 34 ................................ AAAGAAACTGTTTCAAGTTCCCCACACGTGTCAC 38811 32 100.0 34 ................................ CAACGATTTGTTTCCAAATTTTAACCTCATAGCT 38745 32 100.0 34 ................................ AGACTGGAAGAGTTCATAAACTTCATTATTTCCG 38679 32 100.0 34 ................................ AATAATGCCACCTAAGATTTTTAAGACAGCACCT 38613 32 96.9 34 ..............................G. AACGTATCGACAGACTAGCTGCTCGGACGGACCG 38547 32 78.1 0 ....T......TG..TA.....A........C | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.1 34 GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Left flank : GCAAAGGCTATTCGAGGGGAGTTGGACAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGCTCAGTCACCCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGATAAGGAGCAGGATAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGACGAGATACTAGTTATGATCCTGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGTATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATAGCGCT # Right flank : TGTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCGTCTGGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //