Array 1 171239-173220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMN01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171239 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171300 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171361 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171422 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171483 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171544 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171605 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171666 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171727 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171788 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171849 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171910 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171971 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172032 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172093 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172154 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172215 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172276 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172337 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172398 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172460 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172521 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172582 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172643 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172704 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172766 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172827 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172888 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172949 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173010 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173071 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173132 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173193 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189728-191586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMN01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189728 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189789 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189850 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189911 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189972 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190033 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190094 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190155 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190216 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190277 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190338 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190399 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190460 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190521 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190582 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190643 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190704 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190765 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190826 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190887 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190948 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191009 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191070 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191131 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191192 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191253 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191314 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191375 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191436 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191497 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191558 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 191960-192477 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMN01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712456, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191960 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192021 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192082 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192143 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192204 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192265 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192326 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192387 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192448 29 93.1 0 A...........T................ | A [192474] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //