Array 1 1850282-1851959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKM01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03478 2014LSAL03478_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1850282 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1850343 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1850404 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1850465 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1850526 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1850587 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1850648 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1850709 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1850770 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1850831 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1850892 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1850953 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1851014 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1851076 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1851137 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1851198 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1851259 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1851320 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1851382 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1851443 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1851504 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1851566 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1851627 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1851688 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1851749 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1851810 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1851871 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1851932 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1868218-1870199 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKM01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03478 2014LSAL03478_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1868218 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1868279 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1868340 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1868401 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1868462 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1868523 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1868584 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1868645 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1868706 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1868767 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1868828 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1868889 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1868950 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1869011 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1869072 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1869133 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1869194 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1869255 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1869316 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1869377 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1869438 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1869499 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1869560 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1869621 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1869682 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1869743 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1869804 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1869865 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1869926 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1869987 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1870048 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1870109 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1870170 29 96.6 0 A............................ | A [1870196] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4544942-4545120 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKM01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03478 2014LSAL03478_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 4544942 31 100.0 46 ............................... TTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA 4545019 31 100.0 40 ............................... CTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATN 4545090 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================== ================== 3 31 100.0 44 AGGTAAGGAGGTGATCCAACCGCAGGTTCCC # Left flank : TCCACTAACACACATGCTGATTCAGGCTCTGGGCTCCTCCCCGTTCGCTCGCCGCTACTGGGGGAATCTCGGTTGATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGACGAATCACACTGGGTTTCCCCATTCGGGTATCGCCGGTTATAACGGTTCATATCACCTTACCGGCGCTTATCGCAGATTAGCACGCCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCTTACGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCTGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAANAGCTACAAGCCTGTAGAGGTTTTACTGCTCGTTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTA # Right flank : CCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCGAGGTCGCTTCTCTTTGTATGCGCCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTCTCCTTTGAGTTCCCGACCTAATCGCTGGCAACAAAGGATAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTAAGGAGGTGATCCAACCGCAGGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //