Array 1 499-175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOS01000347.1 Leptospira interrogans strain A05D31 Contig348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 498 36 97.2 36 .....................T.............. AAATCTTTTCTCGGTCGCCTTGGCGCAGAGGTCAGG 426 36 100.0 37 .................................... ATCGTAATTAAAGTTGAAATCTGGCCGAACGGCGACG 353 36 100.0 35 .................................... AATCTTTTTTTGATTGGGTGGTATCTGTGATTCAG 282 36 100.0 35 .................................... GTCGAGCGGCTATTAGAGCTAGACGACAGGGAGCG 211 36 91.7 0 ..............................T..A.T | G [182] ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 97.8 36 CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Left flank : CAACTTACAAAAATCGGGATGCCGTTGGCGTTGAACACTGAATCTATGCGGTGCAGATCTACGCGATGCAGAT # Right flank : TGAAGAGAAGATTTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 566-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOS01000349.1 Leptospira interrogans strain A05D31 Contig350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 565 36 100.0 36 .................................... TCTTAGAGGTAAGTCCGACAGTTCCACTGGAACTTA 493 36 100.0 35 .................................... TATATTTGAATACAAGTTTTACCGATTTTTTAAAT 422 36 100.0 34 .................................... ATAGTCTAACTCTTCTACATAAAAATCTCCGTTT 352 36 97.2 36 .....................G.............. CCGGACTATCGAGAAAGTTGAGTGAGGCGGGTTTTG 280 36 100.0 34 .................................... TAAGATTGCCTGTTAACGTCTTTTACTCTGGCGG 210 36 88.9 0 ..............................T..ATG | A [179] ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 97.7 35 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : TTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTAGTATACTAAGATGATAAAGATGGATTCCTCG # Right flank : GAGGAGAAGATTTGTTTTAGCCCAAATTGTTTCGCACCAAACGTGCAAACGGATAAAATGTAGGAACTACTACTTTTCCGAAAAACTGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //