Array 1 272-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCN01000046.1 Leptospira santarosai serovar Grippotyphosa strain LO-9 Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271 28 96.6 32 .................-........... AAAACGGGAAAGAAGAAGGTAAGAAATCAGGT 211 29 100.0 32 ............................. TGATTCAATACGCGACCGGTCTTCCCGCTGAT 150 29 96.6 32 .............A............... TTTCAGCCATTGTGGCAAAATCAAAAATTGGC 89 29 89.7 33 ....R...............A.......C GGGGAAAACCTTAGACACCCGACAAAACGTTTT 27 27 82.8 0 .......................ATT.-- | ========== ====== ====== ====== ============================= ================================= ================== 5 29 93.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GATAAAAATACGAAGTTTCTTTGAATCCTAAAACGGAAAAACCTCATGACGGATTTTTTTCTCAGAATCCTCGTCTCCACTCGCAATCCGGTCGCCCGCACAAGTTAAAAATTTATAGTTCCAAGTCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAACCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTRCGTTCTCTAAGGATCACTKAAAYAKWSTCAATMKRTTCGTTCTCTAYSGARCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATTTTTAGC # Right flank : C # Questionable array : NO Score: 3.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35609-36003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCN01000006.1 Leptospira santarosai serovar Grippotyphosa strain LO-9 Contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35609 29 100.0 32 ............................. GAAACGCCAAAAGTTTATGACGGCCGCAGAGA 35670 29 100.0 32 ............................. CCTATCCGATTCTGGGAAAAAGGTCCTAATTG 35731 29 100.0 32 ............................. GAGCGGGATCCGTGAAGCGGGATTGTTCTATG 35792 29 100.0 31 ............................. AATACACTATGCAATATGGTATCAGAACTTT 35852 29 100.0 33 ............................. TTCCTCCTGGCACCCTGGATTCTGTCCTATTTC 35914 29 100.0 32 ............................. TCCAAATATTCATGGATGTGGAGTGTGGATTA 35975 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCCAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAACTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : GGCTGCGCACATCCGAATGAACCGCTTCCCACCATACGAGCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGATTTCTTTTAAGATTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCGGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGAGCTACCATTCCTAAAGCTCCATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGACTTTGAAAAAGCTATGGATATTTACCAAAAAGGTTCTAAAAAATATCGGAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51496-51224 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCN01000047.1 Leptospira santarosai serovar Grippotyphosa strain LO-9 Contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51495 28 96.6 32 ....................-........ AAAACGGGAAAGAAGAAGGTAAGAAATCAGGT 51435 29 100.0 32 ............................. TGATTCAATACGCGACCGGTCTTCCCGCTGAT 51374 29 96.6 32 .............A............... TTTCAGCCATTGTGGCAAAATCAAAAATTGGC 51313 29 100.0 32 ............................. GGGAAAACCTTAGACACCCGACAAAACGTTTT 51252 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATAGTTCCAAGTCTCAATATATTATAATTTTTTCTAATATTCAAATCACATGATTCCGAATATAGAATCATAGCTCCTTGAATATGGCGGTTTTATTTTTCATACCGATCGTTTTTGTGAACTAAAATACAAGATCAACCTATTTCTATAAGAACCTGTCTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCAAAAGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGGGAAACTCAATGCCTTCGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATTTTTAGC # Right flank : TTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTACATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTCGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTCATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 80772-81445 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTCN01000049.1 Leptospira santarosai serovar Grippotyphosa strain LO-9 Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 80772 35 100.0 35 ................................... CAATCGAATTGTTGCGATCAACTTAATTTGTGACG 80843 35 100.0 38 ................................... CTCACGACAATAAATTTTTAGGATGGTACATTCCAAGA 80917 35 100.0 37 ................................... CAAATCTACGCCGTGCAGATCTACGCGATGCAGATCT 80990 35 100.0 33 ................................... AGTTCGTATCTAAAATGTTTCGGATTACTCAGA 81059 35 97.1 23 ..................................T TTTATCGAATGCTATGTGCTCGA Deletion [81117] 81118 35 100.0 35 ................................... GACTACATTTACAGTGCAGGCACTCTCACCGAGAT 81188 35 100.0 37 ................................... ACGAGATAGTGATAGGTATCGGCTTCCAAAACTTCAC 81260 35 94.3 40 ....................A....T......... CGAAGTAATACATTCAATTTTAACGACGAACGGATTTCAG 81336 35 97.1 39 ...............................A... CACTACAGAATCGAATGATCAAGACATGAGCCAAATCGA 81410 35 85.7 0 .............................TCA.TT | T [81431] ========== ====== ====== ====== =================================== ======================================== ================== 10 35 97.4 35 CTGAATATAACTTTGATGCCGAAGGCGTTGAGCAC # Left flank : AAATTGGCAAAAGTCACCGAAAAGGAAGACGATATATTCTACCTAACACTCTGTGCCAAATGTGCTTCCGGCGCTCATACCCAGGAGAAAAAATCCGCCTGGCCGGATGCTCCAAAGACACTGAAAATTCTGTAATTCAAGTATCTCTTTCGGGCATAGACATAATTCTCTTTCGAAAACAAATACTTTCCACTTTTCATCTTTGTTTAGTTCCCATAGTATCAATTTTCATTGGATTCCAGAATAGTTTCGATCAGTTGATACTTGGCGCCTATTTTTCTTTCTTGCGAAAATTCTGATTCAATTCATTATTAGAAATCGGCTAAAATGTAATTGAATCCTTAAATTCAAAGCTAAAACACCAAATGAAGCAAAATCCTACTGGTTATAGAAAATATAAATATGAAAAATAATTATATGGAAGGATATGCTTGTTTACTATTTAACAATGTCTTTGTATCTGCAATCCCTCCGCGCAAAAATGATCAAAAAAAAATGCT # Right flank : TCCCCAAAACAATAAAAAAGCCGAAGATCACTCTCCGGCTTTGAATAAACTTAGATCCTTAACAACATACAAACTACGATAGAGAGTTTATCCTATTTGAAATCTTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCGAGTGTCCTCAGGGCTTTCGTAATATGGTCAAGCCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTAGGACTCGTGCAAAGCGAAGGCGAAGCACGAAGTCCTGGGCGTGAAACATAAAAAAAAGCCAGACTGACTTAGCCTGGCTCTTGTTTGATGTTAGTCGTTTTACCGACCTTGGATATCTTTCCTTAACAACATACAAACTACGATAGAGAGTTTATCCTATTTGAAATCTTCTTCGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGTCTTGAGTGCCCTCAAGACTTTCGTAATATGGTCAAGCCTCACGACCGATTAGT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //