Array 1 107913-106131 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIQ01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2050 NODE_10_length_164350_cov_0.138775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107912 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107851 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107790 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107729 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107668 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107606 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107545 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107484 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107423 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107362 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107301 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107240 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107179 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107118 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107057 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106996 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106935 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106874 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106812 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106709 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106648 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106587 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106526 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106465 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106404 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106343 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106282 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106221 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106160 29 96.6 0 A............................ | A [106133] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125538-124045 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIQ01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2050 NODE_10_length_164350_cov_0.138775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125537 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125476 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125415 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125354 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125293 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125232 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125171 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125110 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125049 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124988 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124927 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124866 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124805 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124744 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124683 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124622 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124560 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124499 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124438 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124377 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124316 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124255 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124194 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124133 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124072 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //