Array 1 47351-52566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033902.1 Trueperella pyogenes strain TP1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47351 29 100.0 32 ............................. ACACCTAACCCGTTCACCGGCTACTATTTCGG 47412 29 96.6 32 ............................G TGAAAACCCGGCTCATACCAGTACTACAAGCG 47473 29 96.6 32 ............................G TGCGGCTTCTACATCGGCTACCGACTGGACGG 47534 29 100.0 32 ............................. TCAGTGAGCGTAGCCACGTCGGCAAGGCCAAG 47595 29 100.0 32 ............................. ACTGTCGACTACTCCAGCAACGTCCACAACTG 47656 29 100.0 32 ............................. CTCGAGAGCCATCCCCGCACGCCCCCTTAGAG 47717 29 100.0 32 ............................. TCATTCGCCGTTGTCGCAAACGTCGTCTTGAA 47778 29 100.0 32 ............................. GAGAATGTGGCACACCGTAAACTAAAAAGTTG 47839 29 96.6 32 ............................G AAGAACCGTCGAATTCGACGGTTTTAGTTTGT 47900 29 100.0 32 ............................. CCGAACTCGTCCTCTGGGAAAACCAGGAGGGG 47961 29 96.6 32 ............................T ATGGGCAGTTTTCACGCCACGCAAGGAGCGCA 48022 29 100.0 32 ............................. AATACTTTGGGGGCGTCCAATGCGGCTTGTGC 48083 29 96.6 32 ............................T TGCCTGGCGGGCGAGGCGCCCGCTATCGACGG 48144 29 96.6 32 ............................G CTGCCCACACCGATTGTCTTGAGCTTGTCTTC 48205 29 100.0 32 ............................. GAGCTGCAAGAGGCGTGGGAGAAAGCGAACGC 48266 29 100.0 32 ............................. GCACCTTGGAGGCATCCACCGTCCCGTCAAGG 48327 29 96.6 32 ............................G TCTCACCGCAATCGATATAGCCCTGCGGCGGG 48388 29 100.0 32 ............................. CATGGACCGCCACATGACACCATCAGCCTCTA 48449 29 100.0 32 ............................. TCCCCGGCAAGGTAGTCTCCGCGATCGGTAAT 48510 29 100.0 32 ............................. CTAACCTCCTATCGTGGCAAAACATCATCGAC 48571 29 96.6 32 ............................T TTCGTGCATGAGGTCTTTCATGTCCGTGGTGG 48632 29 100.0 32 ............................. CCTGAACCCTCTGATTTAGGGTTGGCAGAGAA 48693 29 100.0 32 ............................. AAACCGAGCAAATTCTTGCCGAGATTCTGGGA 48754 29 100.0 32 ............................. GCGACCCCCTCACCGTCAACGACGACTCCTTA 48815 29 100.0 32 ............................. GAAACTGATGAATATGAGCAGATCCGCACCAT 48876 29 96.6 32 ............................G CATCGACACGCGCCCCGCTAGAGCCGCCTCGT 48937 29 100.0 32 ............................. TGCTCAACCGCCGTACTCGCATCTAACGATTT 48998 29 100.0 32 ............................. TTTCCCGCCATCATCACCCGTGACCACCACAC 49059 29 100.0 32 ............................. CGGGCCATGGCCGCCCTGCACGATAACACCCC 49120 29 100.0 32 ............................. GAGCTGCAAGAGGAGCGGGAGAAAGCGAACGC 49181 29 96.6 32 ............................G CAATGGCAGGTTGGGATCCTGTTGGGTTTCAG 49242 29 96.6 32 ............................G GCGAGACCGTGACGTGGCGTGGCAAGCAGTAC 49303 29 96.6 32 ............................A CGGTTGAATCCGCCCACGCGGTTCACGGTCAA 49364 29 100.0 32 ............................. GGTGGGCAAGGCTGCGCTTTTCGCTAAATGCA 49425 29 100.0 32 ............................. GACCTATGGGAGCACCTGCCCATCGTGGAGGG 49486 29 100.0 32 ............................. CCCACACGCACTTTAGACCGCGCCGTCGTGTC 49547 29 100.0 32 ............................. GAAGCAGAGCGCTTCTGGTGCGAAAGCATCAG 49608 29 100.0 32 ............................. TGCCTAAGGGGGAACCCGGCGAGCGTGGTGAA 49669 29 96.6 32 ............................G CACCCGTACGTGGAAGAAGATAAGGTCGAGTA 49730 29 96.6 32 ............................G CGGCGGCGTCAGCCTCTCAAGCATCAGAGTCC 49791 29 96.6 32 ............................G GTGGCTTCTGCGGAGACCGTATCAGGCGTCAA 49852 29 100.0 32 ............................. AATCACCGCAACCGGCGTGATCGACGTGCGTG 49913 29 100.0 32 ............................. AGCACCCTGGCGGCCACGTTAACGCTGAATGA 49974 29 100.0 32 ............................. TAGTCCGGCTTTCATCGCCTTGCCAGCCTTGG 50035 29 100.0 32 ............................. GAGACATCCCGTGAGAATCTCCCGTTCCGCCC 50096 29 96.6 32 ............................G CACGGTCGCATGCTGAGCGGGCTGGTGAGAGC 50157 29 100.0 32 ............................. GACGACTCCTTACCCGTACCTACAGCGCGTTT 50218 29 96.6 32 ............................G GTCGGCCGCGCGGGCGTCGCGAATGGCGGTGA 50279 29 96.6 32 ............................G CCGCTAGGCAAATTCGATAGGAGGTGCAAGGA 50340 29 96.6 32 ............................G GACAAGACATGTACAGTTTCGAAACCATCGCC 50401 29 96.6 32 ............................T CAGCCTTCGCGCGAGTATTCAGAGTGGATTGG 50462 29 96.6 32 ............................G TTTTGGGCAGGGACTTTAATGCTGGTGCCAAG 50523 29 96.6 32 ............................G CAAGCCAGTGAGCGTACACATTTCTCTGTCGG 50584 29 96.6 32 ............................G CTGGACGCTCACTCAAATCAGTATCAGACGAA 50645 29 100.0 32 ............................. AATTGCAGGCGGCGGCTGGTGTGGCCAAACCG 50706 29 96.6 32 ............................G TACCAAAATAGGCAATGTTCGCTAGAGAGCCG 50767 29 96.6 32 ............................G GACATCCCGAGCTCGTCCCTGCGCGCGGCAAG 50828 29 100.0 32 ............................. TTTTTAGCCTGCGACCTTCTGGTCGAGCACGA 50889 29 96.6 32 ............................G TGGTTTTGCCGTCCGGGTCATTGGCAAAAAGG 50950 29 100.0 32 ............................. CAGCCGTCCATTTCGGGGTCCCACGCCAGCTC 51011 29 100.0 32 ............................. GATCAAGCGACGGGAGTGGATGTACAGGCCAG 51072 29 100.0 32 ............................. CTGGGACGCTATCGACCTGGATAACGGGACGC 51133 29 96.6 32 ............................G CACGGTCGCATGCTGAGCGGGCTGGTGAGAGC 51194 29 100.0 32 ............................. TTGAATGATAATGATCCACTTGAGGTTCGCCC 51255 29 100.0 32 ............................. CACCACCATCAACGCCACGAGTAACGCCAATA 51316 29 100.0 32 ............................. GGTCCCACGCGCGGGCCAGGCCACGCCGTATG 51377 29 96.6 32 ............................G TTCGGGGTCTTATCCGGCGTTTGACCAGGCAC 51438 29 100.0 32 ............................. AACAACGATTGGAGAAAAATAATGGTGGAGAA 51499 29 96.6 32 ............................T TACAATGAAGTTCTTCGGCTCCGATGGCACAC 51560 29 96.6 32 ............................G ATCTAGGCCTCGGCGTCTAATCGCATGGGAAG 51621 29 96.6 33 ............................A ACGCCGTATGTAACAAGCCTGCCAGTGAGGAGC 51683 29 96.6 32 ............................G CCTACGAGGCAGCAAAGGCGGCCATGCTATGA 51744 29 100.0 32 ............................. TTGTTCGTAACGTTGGTCTTCGTCGGGTTAAA 51805 29 100.0 32 ............................. GCGTTTACCGGCAGCGGTTTTCGGGCGCTTGA 51866 29 100.0 32 ............................. TGCGCCCGTGTTGGACGAATCCAGCATAGACA 51927 29 100.0 32 ............................. GCTTGCGCTCATCATGGAGCAAACAACGGATA 51988 29 100.0 32 ............................. CTTCTGTGAGCTTCGACGATTGCATTTCTTTC 52049 29 100.0 32 ............................. CAAATTCTGACCGCTCACATCTGCCGCGACTG 52110 29 96.6 32 ............................G CAAAGCACGCACGCGCCGTTTCGAAGCAACCA 52171 29 100.0 32 ............................. TCACCGCACCTCACCCCCGCGCGGCCACACAC 52232 29 100.0 32 ............................. CGTCCGCACCAAGACAGAAGCCCGCCAACTCC 52293 29 96.6 32 ............................G TCCCAGCGCAGTTCACGCCGTCAACGGGCGGT 52354 29 100.0 32 ............................. AGCTAGCCGCCGGACTGGGCGACATCCTTTCC 52415 29 100.0 32 ............................. CTGCGAGGAGCTAACCTGCGATACGCTAACCT 52476 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 52537 29 93.1 0 ..........................T.A | C [52562] ========== ====== ====== ====== ============================= ================================= ================== 86 29 98.6 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGGTGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGATTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTAGATTACACGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCCTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAAGT # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCGGGGTCCCCATTTTCTTCCGTATGATCCCTGATATTTGACAGATCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTGGTCAAAGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //