Array 1 243182-241579 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEP01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE991 NODE_2_length_473382_cov_64.3647_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243181 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243120 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 243059 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242992 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242931 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242870 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242809 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242748 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242687 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242626 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242565 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242504 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242443 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242382 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242321 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242260 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242199 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242138 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242035 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241974 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241913 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241852 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241791 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241730 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241669 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241608 29 96.6 0 A............................ | A [241581] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260565-259439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEP01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE991 NODE_2_length_473382_cov_64.3647_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260564 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260503 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260442 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260381 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260320 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260259 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260198 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260137 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260076 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260015 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259954 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259893 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259832 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259771 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259710 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259649 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259588 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259527 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259466 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //